Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n21
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   1.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   1.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   2.4  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    24   4.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   5.6  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    23   7.5  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    23   9.9  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    23   9.9  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 79  QPLRTTGTSLQMARAQCVGKISTCIAL*IYGRLLFK 186
           + L T  T+ ++A AQ VGK++  + L ++ + L+K
Sbjct: 557 EALLTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYK 592


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 272 YTASAKHFEHLVVSSSYIKNNVIRRGFLYLKSKRPYIHN 156
           YT       + +V + Y K  + RRG  YL+   P++ N
Sbjct: 57  YTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLAN 95


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 189  IFEEQAPIYSQCNTCTYFPNALCTCHL 109
            +FE +AP  +  + CT    +   CHL
Sbjct: 1783 LFENKAPFVNSTSICTAVSESRSCCHL 1809


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/41 (19%), Positives = 19/41 (46%)
 Frame = +3

Query: 54  QKNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 176
           +++G G+++    YWD+       V   + + Y   + W +
Sbjct: 637 EQHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKYKADDYWRI 677


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 102  IATDGTCTVR-WENKYMYCIVNIW 170
            ++  G  T R +E KY+Y ++NIW
Sbjct: 1196 LSVPGLNTSRGFETKYLYNLMNIW 1219


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 234 DD*VFEMFRRSSIPSLNKTI 293
           DD +FE      +PS+N+TI
Sbjct: 187 DDDLFEQTSNGKLPSINETI 206


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 143 LIFPTHCARAICSDVPVVRSGCMQTGTILLSYGNSH 36
           L  PT   RA C+ VPV +   +    +++SY   +
Sbjct: 69  LFGPTLALRANCAFVPVRKPNKLPGDLVVVSYNKEY 104


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +3

Query: 75  HTAAAYYWDIATDGTCTVRWE----NK-YMYCIVN 164
           +T+A Y WD   D   ++ WE    NK  M C++N
Sbjct: 179 YTSAIYTWDFFQDTFGSLYWEEGKLNKDEMECLLN 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,083
Number of Sequences: 5004
Number of extensions: 25987
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)