Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19n19
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 2.5
12_02_0879 + 23960084-23961551,23961796-23962184 29 3.3
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 29 4.4
10_07_0108 - 12942031-12942048,12942167-12942357,12944659-12945307 28 5.9
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187... 28 5.9
01_06_0076 - 26206591-26206796,26209098-26209746 28 5.9
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 28 7.7
09_03_0020 - 11594806-11595168 28 7.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 7.7
02_04_0391 + 22576839-22577387 28 7.7
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 359 LQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTLRSHK 487
L +N IE+ P++ PK+IR P E TP HK
Sbjct: 505 LSTRNRIESRNPLAFAPKVIRTCGPGLEFGEDSNATPASSRHK 547
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/114 (25%), Positives = 46/114 (40%)
Frame = +2
Query: 122 DKLQDDVNDHGKTLGDLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCS 301
D VN +T D K V +++N + + K ++ P K S S+ S
Sbjct: 378 DAPSPSVNSEKQT--DRKMTVMNVAKNARVW-QKKEEEKISPVKLSRSINLSSKSLLSIK 434
Query: 302 VPKRKKNIQPLPIKSKAKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRK 463
+ KK +KS K +N + V K ++ SP+ RKVE +K
Sbjct: 435 MRAVKKEKPASLVKSNKKVYGAENAVA-----DVKEKNLKSASPKVRKVEVSKK 483
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 540 LLHSTICSFSLLCLFSKPLWDRSVGVLRGVSTLRVRGERFLIIFGGTEI 394
L S I + ++L S P W SV TL V+ ++ I+FGGT+I
Sbjct: 327 LAGSAIVNEAILTGESTPQWKVSVAGRGPEETLSVKRDKNHILFGGTKI 375
>10_07_0108 - 12942031-12942048,12942167-12942357,12944659-12945307
Length = 285
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 167 DLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQPLPIKS 346
DL+ M+ + + G L++W+ K S + Y+ETK + ++ L +K+
Sbjct: 64 DLEDMLRHVEPEVLAGRSRGLENWQALEKASKDLLYDETKGCDKDFTVLRSVLELLRLKA 123
Query: 347 K 349
K
Sbjct: 124 K 124
>04_01_0168 -
1874297-1874645,1874968-1875137,1875688-1875807,
1876750-1876812
Length = 233
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 195 HKIQ*SVLKASSTIGGYLSRRLHQYSTKKQKEIHALFP 308
H I + K S IGG R+ +Q ST+K++ + L+P
Sbjct: 120 HHIPCPIRKQPSDIGGVPIRKGNQSSTRKRQGLFGLYP 157
>01_06_0076 - 26206591-26206796,26209098-26209746
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 167 DLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETKRDSCSVPKRKKNIQPLPIKS 346
DL+ M+ + + G L++W+ K S + Y+ETK + ++ L +K+
Sbjct: 64 DLEDMLRHVEPEVLAGRSRGLENWQALEKASKDLLYDETKGYDKDFTVLRSVLELLRLKA 123
Query: 347 K 349
K
Sbjct: 124 K 124
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 504 CLFSKPLWDRSVGVLRGVSTL 442
C P+W+++ GVL+GV+T+
Sbjct: 62 CQQLTPIWEKAAGVLKGVATV 82
>09_03_0020 - 11594806-11595168
Length = 120
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 167 DLKTMVSKLSQNTVIGPESKLDDWRVPFKTSASVQYEETK 286
DL+ M+ + + G L++W+ K S + Y+ETK
Sbjct: 64 DLEDMLRHVEPEVLAGRSRGLENWQALEKASKDLLYDETK 103
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 350 AKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTP 469
A+ Q + A P P R+RSP +R+VE+PR P
Sbjct: 245 AEKATKQQPRKPASPQRKPAPSPRRRSPPSRRVESPRCRP 284
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 311 RKKNIQPLPIKSKAKSLQNQNIIEAAFPISVPPKIIRKRSPRTRKVETPRKTPTL 475
++K+++ P + +Q N E + PP ++ R P T ETP +P+L
Sbjct: 49 KQKHVEIQPTNKLEQLIQPTNEHEQQQLLQPPPSVL-VREPETAGPETPHPSPSL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,731
Number of Sequences: 37544
Number of extensions: 278986
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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