Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n18
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.5  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    27   3.5  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   3.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.1  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 287 LEARDEVSSILFHYYYAL*H 346
           LE+RD+V S+LF+Y  +L H
Sbjct: 517 LESRDDVVSLLFNYVLSLIH 536


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 107 YTSDDKLSSNLLTSLIVSYDCL 172
           YT D +   NL TSL+V YDCL
Sbjct: 94  YTRDAQ--GNLKTSLLVDYDCL 113


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 313 YFVSLLLRSLTHNKYLIIPVTHYNRKKTKLINKKF 417
           Y VS +L+  THN+  I  + H+ R+ +    +KF
Sbjct: 402 YLVSDILQLATHNRSFICSLPHFLRRWSNEHGRKF 436


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 423 VPTIIFP*KTCSQKGWLTKCCQSTNNPIF-YLQNYIEVTFIFK 548
           VPT  F  +T S   +L +   STNNPI  Y  NY +   I +
Sbjct: 823 VPTSDFSSRTLSTDNFLIRV-GSTNNPIVHYSANYSDTLLIMQ 864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,021
Number of Sequences: 5004
Number of extensions: 53530
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)