Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n18
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789...    30   2.1  
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514...    29   4.8  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    28   6.4  

>03_06_0762 +
           36078414-36078539,36078700-36078750,36078832-36078981,
           36079055-36079803,36079914-36080013,36080116-36080259,
           36080333-36080452,36080532-36080846
          Length = 584

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/76 (34%), Positives = 37/76 (48%)
 Frame = +1

Query: 331 LRSLTHNKYLIIPVTHYNRKKTKLINKKFNMYLPLFFHKKHARKRGG*LNVVSQQITLFF 510
           LR LTH++ L   +  YN   T +++   +  LP    K  A K    LNV  Q++    
Sbjct: 370 LRFLTHHQKLAFWLNIYN---TCIMHGILHNGLPSNPEKLLALKNKATLNVSGQKLNALV 426

Query: 511 IYRIILR*LSSLRFEF 558
           I   ILR  SS++ EF
Sbjct: 427 IENFILRQPSSVKEEF 442


>12_01_0624 -
           5137096-5137310,5137923-5138380,5138428-5140070,
           5140245-5140462,5140589-5140757,5141249-5141305
          Length = 919

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 377 CVTGIIKYLLCVKERNNNETKYSKLHLGLLALI 279
           C+ GII  LL  KER   E +  KL   LLA++
Sbjct: 873 CIAGIIDGLLKDKERRAKELRMVKLLCALLAVV 905


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 442 HKKHARKRGG*LNVVSQQITLFFIYRIILR*LSSLRFEFIYNYFKNTLSLLC 597
           +K+ + K      V+S Q TL F  R +L     L F  IYN  K +L L+C
Sbjct: 74  NKEKSLKLSSVSRVLSGQRTLVF-QRFLLPEKDHLSFSLIYNDGKRSLDLIC 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,112
Number of Sequences: 37544
Number of extensions: 254427
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)