Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n15
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   0.78 
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   1.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   1.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   3.2  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    23   7.3  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 120 ACTACPLRISEKTPFLGIVILFTMSGTTL 34
           AC + P+ +S    FLG+  ++ ++GT +
Sbjct: 88  ACLSVPIALSFAQTFLGVPPIYILTGTAI 116


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 73  WYRDLVHYVGYD 38
           W R+LVHY GY+
Sbjct: 395 WNRNLVHYSGYE 406


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +2

Query: 8   DFMPREIRVKVVPDIVNKITIPR------NGVFSEILSGH 109
           DF+ +++R ++  D+V+ + +P       N +FS +LS H
Sbjct: 313 DFISKKLRKRLNGDVVHNLDVPHDKSYKSNYLFSVVLSPH 352


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 97  SKWACGTCVILVELYC 144
           S W+CGTC  +  L C
Sbjct: 209 SIWSCGTCYHVFHLSC 224


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 91  RKNSVSWYRDLVHYVGYDFNPYFS--GHKVV 5
           R    S +RD +HY G++     +  GHK +
Sbjct: 532 RGPETSMHRDAIHYGGWEHRDIHNIYGHKCI 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,825
Number of Sequences: 5004
Number of extensions: 11621
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)