Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n14
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   6.6  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   6.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   6.6  

>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +2

Query: 260 LILSIDVFECVRNCFDTLLCNNHQVF*FCCKISITKYVSTGFHCLLLQYKVQLNSLQQ 433
           LIL   + E V +CF+TL+ +  Q +   C I+ T  V+  F  L L    +++ L+Q
Sbjct: 67  LILKKRMDERVDHCFETLVQHLQQTYPDICIITETD-VAKKFSYLNLYTWTEISDLEQ 123


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 155 SYNIIINYFLIVFKCAAIIYNFNLIISIL 241
           SY+I++NY  I+      ++ FN++I +L
Sbjct: 105 SYSILVNYGFILNMVHMYVHVFNILILLL 133


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 263 ILSIDVFECVRNCFDTLLCNNHQVF*FCCKISITKYVSTGFHCLLLQYKVQLNSLQQTLV 442
           I S+ V     NC   L+  + +VF FC    I     + +  LL + KV LN++   L+
Sbjct: 339 IFSLLVIALCLNCISLLIAASREVFAFCRDGGIP---GSRYLRLLTKQKVPLNAILLVLL 395

Query: 443 SNSFTAIS*SQLSNKMSNSINLTAIII 523
            +    +        +S+  NL  I +
Sbjct: 396 YSLLVGLLILVNVTAISSVFNLAIIAL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,099
Number of Sequences: 5004
Number of extensions: 35228
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)