Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n13
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    63   3e-11
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    58   9e-10
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    28   1.4  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   5.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   7.6  

>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
 Frame = +2

Query: 284 CIFDMDGLLLDTEQVYKKMITQLCAQYGH-TYTNELMMKILGGTEQRLSEILCKELNLPV 460
           C+FDMDGLL+DTE +Y K    +  +Y    ++ E+  K++G T +  S I      + +
Sbjct: 6   CLFDMDGLLVDTESIYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGIDL 65

Query: 461 TPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKE 640
           T  E+         ++   T  L G   L+  L    +P ALATSS   + + K A    
Sbjct: 66  TCEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSH 125

Query: 641 LFQLF 655
           LF  F
Sbjct: 126 LFDHF 130


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
 Frame = +2

Query: 284 CIFDMDGLLLDTEQVYKKMITQLCAQYG-HTYTNELMMKILGGTEQRLSEILCKELNLPV 460
           C+FDMDGLL+D+E +Y K    +  +YG       +  +++G      ++++    N+P+
Sbjct: 11  CLFDMDGLLVDSETIYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAAKVVIDWSNIPM 70

Query: 461 TPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALAT 592
           TP +F D+  V+  K  +    + GAE LI +L    +   + T
Sbjct: 71  TPQQFVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGVCT 114


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 633 CAATLVFTDRSLDDVASANGTFVLCKCLISFSAPSNKGVPASILSPKTS---N*SLNSV 466
           CA + V TDR L+   + NG FV   C   F    + G   SI +   S   N SLNSV
Sbjct: 9   CAGSEVETDRVLEKDQANNGHFVDSDC--CFQETGSTGTANSICTLNDSEDDNSSLNSV 65


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 617 SSLIVHLMTWLARTVLLFYVNALLVFLHHLIRVY 516
           +S +   + W  ++  + Y++ LLV ++HLI+ Y
Sbjct: 843 NSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKY 876


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 307 QTVHIKYT-VGDGLKIIRRVASRANSFRNRSY 215
           Q +H   T VGDG  I + VA RA S   R+Y
Sbjct: 377 QNLHSSSTAVGDGASIHQNVARRAMSGNARAY 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,546
Number of Sequences: 5004
Number of extensions: 50435
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)