Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19n13
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0890 - 8761787-8761910,8761987-8762063,8762163-8762310,876... 78 6e-17
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200... 73 2e-13
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308... 70 1e-12
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 38 0.006
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 30 1.9
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 29 3.4
08_02_1062 - 24016832-24016880,24016946-24016992,24017065-240171... 28 5.9
03_01_0032 + 300759-301988 28 5.9
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 28 7.8
>08_01_0890 -
8761787-8761910,8761987-8762063,8762163-8762310,
8762430-8762490,8764714-8764938,8764990-8765170
Length = 271
Score = 78.2 bits (184), Expect(2) = 6e-17
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Frame = +2
Query: 311 LDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNLP--VTPTEFRDQ 484
LDTE Y ++ ++ A+YG + L K++G + I E L +TP +F ++
Sbjct: 60 LDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIFVDECGLDGLLTPEQFLEE 119
Query: 485 LLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKELFQLFHHM 664
+ ++ +L G +LI HLH VP A+AT S +R K HKE+F L HH+
Sbjct: 120 RESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRHFALKTQNHKEMFTLMHHV 179
Query: 665 VMG 673
VMG
Sbjct: 180 VMG 182
Score = 27.1 bits (57), Expect(2) = 6e-17
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 275 VTHCIFDMDGLLL 313
V+H IFDMDGLLL
Sbjct: 17 VSHVIFDMDGLLL 29
>10_08_0301 -
16619499-16619675,16619770-16619853,16619932-16620083,
16620296-16620391,16620473-16620627,16620791-16620856,
16620993-16621062,16621175-16621305,16622121-16622307,
16622410-16622485
Length = 397
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/135 (26%), Positives = 71/135 (52%)
Frame = +2
Query: 269 KTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKEL 448
+ ++H I D+DG LL+T+ V +++ + G + ++ K++G T + ++ ++
Sbjct: 9 RLISHVILDLDGTLLNTDCVVSQVLKPFLVKNGKKWDSKKAHKLVGKTPYEAAAVVLEDY 68
Query: 449 NLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVA 628
LP + EF L + ++ L GA +LI+HL VP ALA++S ++ K++
Sbjct: 69 GLPYSTEEFLSMLTPMFNEQWCNIKALPGANRLIKHLKSNGVPAALASNSPRSNIDAKIS 128
Query: 629 AHKELFQLFHHMVMG 673
H+ + F +V G
Sbjct: 129 CHQGWKESFSAIVGG 143
>01_06_0768 -
31829753-31829851,31830454-31830593,31830729-31830818,
31830905-31831059,31831598-31831663,31831862-31831931,
31832299-31832429,31832516-31832702,31832828-31832894
Length = 334
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/133 (30%), Positives = 68/133 (51%)
Frame = +2
Query: 275 VTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNL 454
V+ IFD+DG LLDTE+ + ++ + A YG E + LG + + + + L
Sbjct: 8 VSAVIFDLDGTLLDTERATRDVLNEFLAAYGKVPDKEKEERRLGQMYRESTTGIIADYGL 67
Query: 455 PVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAH 634
P+T E+ + L K L G E+L++HLH+ VP ALA++S R++ K+
Sbjct: 68 PLTVEEYAVAIYPLYLKRWQKAKPLPGVERLVKHLHRNGVPLALASNSVRRNIDHKLLKL 127
Query: 635 KELFQLFHHMVMG 673
K+ F ++ G
Sbjct: 128 KDWKDCFSVILGG 140
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 LNLPVTPT-EFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTK 622
+ P +P+ + RD++ + L GA +LI+HL VP ALA++S +++ K
Sbjct: 1 MEAPCSPSGKKRDKMRKKEIVLWCNIKALPGANRLIKHLKSNGVPAALASNSPGSNIEAK 60
Query: 623 VAAHKELFQLFHHMVMG 673
++ H+ + F +V G
Sbjct: 61 ISCHQGWKESFSAIVGG 77
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 29.9 bits (64), Expect = 1.9
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%)
Frame = +2
Query: 275 VTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILG-GTEQRLSEIL----C 439
V+ +FDMDG+L ++E++ + L A+ G T + + +G G L +
Sbjct: 80 VSAVLFDMDGVLCNSEELSRLAGVDLFAEMGVDVTGDDFVPYMGTGEANFLGGVAKLKGV 139
Query: 440 KELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKT 619
K+ N F + L K AG GA L+ + A+A+S+ V
Sbjct: 140 KDFNAESAKKRFFEIYLDKYAKPNAGIG-FPGALDLVTECKNAGLKVAVASSADRIKVDA 198
Query: 620 KVAAHKELFQLFHHMV 667
+AA LF +V
Sbjct: 199 NLAAAGLPLSLFDAIV 214
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 401 LGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDK 505
LGG +R+ ++C+EL +PV P EF V GDK
Sbjct: 854 LGGVTRRVVRLVCEELGVPV-PDEFS----VAGDK 883
>08_02_1062 -
24016832-24016880,24016946-24016992,24017065-24017124,
24017200-24017259,24017364-24017419,24017891-24017924,
24018015-24018089,24018348-24018398,24018495-24018539,
24019073-24019148,24019495-24019898
Length = 318
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 248 CYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYG 367
C S + ++ IFD DG++L++E ++++ A +G
Sbjct: 58 CASAASAGSLDALIFDCDGVILESEHLHRQAYNDAFAHFG 97
>03_01_0032 + 300759-301988
Length = 409
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 630 HIRSSSNFSTTWSWE 674
H R+S+NFS TW W+
Sbjct: 194 HKRTSTNFSKTWQWQ 208
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 651 SWKSSLCAATLVFTDRSLDDVASANGTFVLCKCLISFSAPSNKGV 517
S ++CA L F D S + N T+VL K ++ S+ + GV
Sbjct: 313 SISGTICANNLSFADTSTCSSLTLNSTYVLLKNILGKSSSTVYGV 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,883
Number of Sequences: 37544
Number of extensions: 294173
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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