Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19n13
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK223405-1|BAD97125.1| 214|Homo sapiens haloacid dehalogenase-l... 97 5e-20
M86934-1|AAA58622.1| 214|Homo sapiens GS1 protein. 97 7e-20
BC012494-1|AAH12494.1| 214|Homo sapiens haloacid dehalogenase-l... 97 7e-20
BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein comple... 30 8.6
AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein. 30 8.6
AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein. 30 8.6
AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein. 30 8.6
>AK223405-1|BAD97125.1| 214|Homo sapiens haloacid dehalogenase-like
hydrolase domain containing 1A variant protein.
Length = 214
Score = 97.1 bits (231), Expect = 5e-20
Identities = 48/126 (38%), Positives = 73/126 (57%)
Frame = +2
Query: 296 MDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNLPVTPTEF 475
MDGLLLDTE++Y + ++C +Y Y+ ++ ++G ++I+ L LP++ E
Sbjct: 1 MDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEEL 60
Query: 476 RDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKELFQLF 655
++ ++ L+ GAEKLI HL K +PFALATSS S K + HKE F LF
Sbjct: 61 VEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLF 120
Query: 656 HHMVMG 673
H+V+G
Sbjct: 121 SHIVLG 126
>M86934-1|AAA58622.1| 214|Homo sapiens GS1 protein.
Length = 214
Score = 96.7 bits (230), Expect = 7e-20
Identities = 48/126 (38%), Positives = 73/126 (57%)
Frame = +2
Query: 296 MDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNLPVTPTEF 475
MDGLLLDTE++Y + ++C +Y Y+ ++ ++G ++I+ L LP++ E
Sbjct: 1 MDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEEL 60
Query: 476 RDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKELFQLF 655
++ ++ L+ GAEKLI HL K +PFALATSS S K + HKE F LF
Sbjct: 61 VEESQTKLKEVFPMAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLF 120
Query: 656 HHMVMG 673
H+V+G
Sbjct: 121 SHIVLG 126
>BC012494-1|AAH12494.1| 214|Homo sapiens haloacid dehalogenase-like
hydrolase domain containing 1A protein.
Length = 214
Score = 96.7 bits (230), Expect = 7e-20
Identities = 48/126 (38%), Positives = 73/126 (57%)
Frame = +2
Query: 296 MDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNLPVTPTEF 475
MDGLLLDTE++Y + ++C +Y Y+ ++ ++G ++I+ L LP++ E
Sbjct: 1 MDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEEL 60
Query: 476 RDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKELFQLF 655
++ ++ L+ GAEKLI HL K +PFALATSS S K + HKE F LF
Sbjct: 61 VEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLF 120
Query: 656 HHMVMG 673
H+V+G
Sbjct: 121 SHIVLG 126
>BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein complex,
subunit zeta 1 protein.
Length = 177
Score = 29.9 bits (64), Expect = 8.6
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = +2
Query: 221 TVPKAVGARCYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELM-MK 397
T P + + N F TH LL VYK I G +Y NELM M
Sbjct: 34 TYPSVKEQKAFEKNIFNK-THRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMA 92
Query: 398 ILGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRH 556
+L LS++L K + E + L + D+++ G +L+ + + H
Sbjct: 93 VLNCLFDSLSQMLRKNVEKRAL-LENMEGLFLAVDEIVDGGVILESDPQQVVH 144
>AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein.
Length = 177
Score = 29.9 bits (64), Expect = 8.6
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = +2
Query: 221 TVPKAVGARCYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELM-MK 397
T P + + N F TH LL VYK I G +Y NELM M
Sbjct: 34 TYPSVKEQKAFEKNIFNK-THRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMA 92
Query: 398 ILGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRH 556
+L LS++L K + E + L + D+++ G +L+ + + H
Sbjct: 93 VLNCLFDSLSQMLRKNVEKRAL-LENMEGLFLAVDEIVDGGVILESDPQQVVH 144
>AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein.
Length = 177
Score = 29.9 bits (64), Expect = 8.6
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = +2
Query: 221 TVPKAVGARCYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELM-MK 397
T P + + N F TH LL VYK I G +Y NELM M
Sbjct: 34 TYPSVKEQKAFEKNIFNK-THRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMA 92
Query: 398 ILGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRH 556
+L LS++L K + E + L + D+++ G +L+ + + H
Sbjct: 93 VLNCLFDSLSQMLRKNVEKRAL-LENMEGLFLAVDEIVDGGVILESDPQQVVH 144
>AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein.
Length = 177
Score = 29.9 bits (64), Expect = 8.6
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = +2
Query: 221 TVPKAVGARCYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELM-MK 397
T P + + N F TH LL VYK I G +Y NELM M
Sbjct: 34 TYPSVKEQKAFEKNIFNK-THRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMA 92
Query: 398 ILGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRH 556
+L LS++L K + E + L + D+++ G +L+ + + H
Sbjct: 93 VLNCLFDSLSQMLRKNVEKRAL-LENMEGLFLAVDEIVDGGVILESDPQQVVH 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,699,709
Number of Sequences: 237096
Number of extensions: 1792406
Number of successful extensions: 14001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14001
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -