Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n09
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.44 
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   4.1  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   7.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    25   9.5  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    25   9.5  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 503 ALWANAALWPEPSVWAVYPLWSVLLTRW 586
           A W +   +P PS W   P ++++L +W
Sbjct: 48  AEWNSHEYFPSPSNWRALPFYTIILDKW 75


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 405 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 277
           T  +H  G+   CK  +V+N    +   R  + R AH+G+   R
Sbjct: 91  TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 555 YTAHTEGSGHRAALAHKAGTNQMKDMG 475
           YT+ + G+    A++H+A TN +K  G
Sbjct: 366 YTSGSTGNPKGVAISHRAATNSIKSHG 392


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = -3

Query: 585 HLVSKTLHRGYTAHTEGSGHRAALAHKAGTNQMKDMG----RRGRTVRIETDRVHKAHSM 418
           H+ S + HR  + +      +++L  +    + K +     R GR+ +   D++ +    
Sbjct: 110 HVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVT 169

Query: 417 ACKTTGMVHSTGNISACKARMVQNT 343
               +G  H  G   AC+    +N+
Sbjct: 170 GLYGSGSFHHDGPFDACRPHRNRNS 194


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +1

Query: 337 ADRVLDHARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASLVGQ 516
           A +V+D A      +PR V  +       VG+ DP R ++  A    H   +    L G 
Sbjct: 564 ATKVIDKAD-NWETLPRDVAESSLEFVSLVGIYDPPRTESKGAVELCHRAGIRVHMLTGD 622

Query: 517 CRPVARAL--RMGSVPP 561
               A+A+   +G +PP
Sbjct: 623 HPETAKAIAREVGIIPP 639


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -3

Query: 570 TLHRGYTAHTEGSGHRAALAHKAGTNQMKDMGRRGRTVRIETDRVHKAHS 421
           T+    T+HTE S  +A    +  T +++ +              HK+HS
Sbjct: 739 TIVEATTSHTESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 508 VGQCRPVARALRMGSVPPVERLANEVEYG 594
           VGQCRP+++ +R   +  V+      ++G
Sbjct: 122 VGQCRPLSKTVRFNVLRVVKHTEGPKQFG 150


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 508 VGQCRPVARALRMGSVPPVERLANEVEYG 594
           VGQCRP+++ +R   +  V+      ++G
Sbjct: 122 VGQCRPLSKTVRFNVLRVVKHTEGPKQFG 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,398
Number of Sequences: 5004
Number of extensions: 32033
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)