Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m24
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    61   1e-10
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    30   0.30 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.53 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    29   0.70 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   2.1  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.0  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   8.7  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.7  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   8.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
 Frame = +3

Query: 129 GLIQGSWKVSTKGRPYAS-FQGVPYARPPIGKYRFREPQQLK---PWTGVWDATRTLSSC 296
           G++ G   +   G+     F G+ YA+PP+GK R+R P  L+    ++G ++  +T+   
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 297 LQYDPFVGTITG-----SENCLFVNVYTPK-LTPTASLPVMVFIHGGAFMYGEGGFY--- 449
             Y+     +        E+CLF+N++ P    P    PV+ FIHGG    G    Y   
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121

Query: 450 DAGNLM----DRDMVVVTLNYRLGPLGFLS----TGDEVAPGNNGLKDQSFALHWVKNNI 605
           D  +L         ++V+  +RL   GFL+      ++    N G  DQ   L W   +I
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHI 181

Query: 606 Q 608
           +
Sbjct: 182 E 182


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 497 IQRDDHHIPVHQISGIVKSPFTVHEGPAMDENHNRKRGRWSQLGCVHIHEQTILTTSYSS 318
           I   + ++P +       +P  V+ G   DENHN ++G+   L     H + + +TS   
Sbjct: 50  ISPSESNLPNNVAENTTDTP--VNYGSIRDENHNSRKGKDVTLNSDEAHSENVPSTSEDP 107

Query: 317 D 315
           D
Sbjct: 108 D 108


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -2

Query: 512 RSQSIIQRDDHHIPVHQ------ISGIVKSPFTVHEGPAMDENHNRKRG 384
           RS++++Q D+HH  +        +S   ++  TV E P +D+N  +K+G
Sbjct: 349 RSENVLQNDNHHSSLSMDNDPTNVSTKNRNNQTVGEHPYVDDNKKKKKG 397


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 246 LKPWTGVWDATRTLSSCLQYDPFVGTITGSE 338
           LK W+ +W+  R L   ++Y  +V T+ GSE
Sbjct: 108 LKIWSKLWEDNRRLKKIIKYTSYV-TVKGSE 137


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 99  GFNPVVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIG 218
           G  P+  ++ G+I   W+   +G   A F   PYA P +G
Sbjct: 204 GCTPLT-LAGGVISDVWETRERGLAIAFFAAGPYAGPTLG 242


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 430 YMKAPPWMKTITGREAVGVSLGVYTFTNRQFSLPVIVPTNGS 305
           YM+A P ++ +   E V    G+Y  + R+  LPVI   N S
Sbjct: 145 YMRATPMVRALESLEHV--FSGLYPESKRKMGLPVIFTRNWS 184


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 356 IHEQTILTTSYSSDEWIVL*TRGKSPRGIPNSSPRLQLLGFPKSILSNWWPCVGNSLKAS 177
           IHE  +   S +S+  ++  +  K    IPN  P   LL     I  ++  C G    AS
Sbjct: 311 IHEGLLFIGSKNSESKLINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNAS 370

Query: 176 V 174
           +
Sbjct: 371 L 371


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 373 SLGVYTFTNRQFSLPVIVPTNGSYCRHEERVLVASQTPV 257
           ++  +    R+F+ PV++ T+G    H   +  +S TPV
Sbjct: 38  NVNAFRLLMRRFAQPVVIITSGFADGHRAGMTASSFTPV 76


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 607 CMLFLTQWRAKDWSFK 560
           C  F++ W+ KD+SF+
Sbjct: 20  CCAFMSHWKLKDFSFR 35


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 559  PLLPGATSSPVLRKPRGPNL*FNVTTTISLSIRFPAS*NPPSPYMKA 419
            P LP  TS      P   N+  N T+   +   FP    PP P + A
Sbjct: 911  PPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPPLVSA 957


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 8   IQITGADARANEDAIKIIFPRCRGGYGDRSRFQPCSEGVPRAYTRQLE 151
           ++ TGA  +   D + I FP+C G   +     PC+ G+ +  + +L+
Sbjct: 261 LRCTGAAVKIASDLLGIAFPKC-GSRIELFCGGPCTVGLGQVVSTELK 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,005
Number of Sequences: 5004
Number of extensions: 63786
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)