Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19m23
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 36 0.003
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 31 0.11
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 29 0.45
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.59
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 5.5
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 7.3
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 7.3
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.6
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 9.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 9.6
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 25 9.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.6
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 36.3 bits (80), Expect = 0.003
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Frame = +3
Query: 36 TCDFQLDLSQTXILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVSVASAFAP 215
T F + L+ + + +++ G IA W +++ GRK LLI M+G I +++ A A
Sbjct: 162 TTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAK 221
Query: 216 NWVFMAVXKFIXTSFXXCAQSXTYTLLGESSSETFRDSYMLIMTS-VLDFXLAVYVVAAY 392
+ + + +F F + + S R + + I + V D L ++ +
Sbjct: 222 DIQTIMMCRFFSGFFASAPLTVVAAAFADMYSNKHRGTAITIFAALVFDGPLVSPIIGGF 281
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.11
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +3
Query: 18 IIVTGATCDFQLDLSQTXILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVSV 197
+ V G+ L Q ++ S + A G++AD GRK LL A I SV
Sbjct: 106 LAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSV 165
Query: 198 ASAFAPNWVFMAVXKFI 248
A + N M V +FI
Sbjct: 166 IMAASRNVAMMVVGRFI 182
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 0.45
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 2/172 (1%)
Frame = +3
Query: 36 TCDFQLDLSQTXILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFI-VSVASAFA 212
T + S+ ++ M VG +AD G++ S+++ I + +
Sbjct: 16 TNSYSYSSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIGIIIQVTTV 75
Query: 213 PNWVFMAVXKFIXTSFXXCAQSX-TYTLLGESSSETFRDSYMLIMTSVLDFXLAVYVVAA 389
P+WV + V K I T A S T E + R + ++ T L L +++ A
Sbjct: 76 PSWVQILVAK-IWTGLSIGALSVITPGYQSEVAPAIMRGA--IVTTYQLFITLGIFIAAC 132
Query: 390 YFILNLPFXLNFGFITFTPWRXXXXXXXXXXGISAMGMHFFYESPKFLVNAG 545
+N+ + T WR I+ +G+ F ESP++L+ G
Sbjct: 133 ---INMGTH-KYSHGTTAQWRISIGINLLWGIITLVGIIFLPESPRYLIAIG 180
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.59
Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 2/172 (1%)
Frame = +3
Query: 36 TCDFQLDLSQTXILLSMPFVGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVS--VASAF 209
T + L ++ +L M VG + IAD G++ S+ I +I+ V
Sbjct: 52 TDQYSLSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSI-IGFCAVYIIGIIVQVTA 110
Query: 210 APNWVFMAVXKFIXTSFXXCAQSXTYTLLGESSSETFRDSYMLIMTSVLDFXLAVYVVAA 389
P+WV + V K I T A S L SET S + T V+ + L +V
Sbjct: 111 VPSWVQIMVAK-IWTGIGIGALS---VLAPGYQSETAPPS--IRGTVVVTYQL--FVTGG 162
Query: 390 YFILNLPFXLNFGFITFTPWRXXXXXXXXXXGISAMGMHFFYESPKFLVNAG 545
FI WR I+ +G+ F ESP++L+ G
Sbjct: 163 IFIAACINMGTHKLHKTAQWRVSIGINLLWGIITMIGILFLPESPRYLIQVG 214
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 135 PLCSPMDTPLLLDRQMA*TVKX---WSDSGPTGSHRW 34
P+ SP+ P LDR + K WSD TGS RW
Sbjct: 83 PIASPI--PRGLDRSGELSYKDNNHWSDRSSTGSPRW 117
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 447 WRXXXXXXXXXXGISAMGMHFFYESPKFLVNAG 545
WR I+ +G+ F ESP++LV+ G
Sbjct: 178 WRVSIGINLLWGIITLVGVSFLSESPRYLVSIG 210
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 545 ASVDKELGTFVEEMHPHSADAQRQ 474
ASV ++ TFV PH+ AQ Q
Sbjct: 161 ASVQQQQATFVSNGQPHNLPAQAQ 184
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 93 VGPIAMAYPWGYIADTKGRKTSLLIAMWGSFIVSVASAFAPNWVFMAV 236
+G + A W ADT GR+ + + + + +V + +PN+ + V
Sbjct: 129 LGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 24.6 bits (51), Expect = 9.6
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +3
Query: 150 KTSLLIAMWGSFIVSVASAFAPNWVFMAVXKFIXTSFXXCAQSXTYTLLGESSSETFRDS 329
K I +W ++ S A F NW+ + T A S TLL S E+ +S
Sbjct: 306 KNRTSIRLWIDYLYSTAVDFYTNWIQKPILGIFDTIRSNRADS-QITLLQTKSLESDMES 364
Query: 330 YMLIMTSVLDF 362
+ V+DF
Sbjct: 365 ---LQRMVIDF 372
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 9.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 153 FSDPWYPLCSPMD 115
+S+PWY C P+D
Sbjct: 52 YSNPWYSQCIPVD 64
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 117 DTPLLLDRQMA*TVKXWSDSGPTGSHRWLLSR*SEK 10
D PL ++ +K D PTG H W L + EK
Sbjct: 7 DLPLSHEQPSYSQIKDVLDKIPTGEHLWDLPKYEEK 42
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 10 LLRSS*QEPPVTSSWT*VRPXFY 78
L +S+ PP+ ++WT ++P F+
Sbjct: 236 LKKSNFPSPPLFTAWTWIKPCFF 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,907
Number of Sequences: 5004
Number of extensions: 37844
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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