Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    27   2.4  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   3.1  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.1  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.5  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.5  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   9.5  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   9.5  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 550 VGIGALSGYLFASKRGIPGRLFFTSLGALAGG 645
           V  GAL+G L+ S RG+      +SL A A G
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAG 196


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 643 HLPKLQDW*RTNDQVYLVLKRKGIRS 566
           +L K+ DW   ND V L   R+GI S
Sbjct: 320 NLEKVHDWEECNDDVALQYAREGIES 345


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 100 CLCPNWLAVFSWFWSRIFIAVPDLFT 23
           C C N++A+F   +  IF+  PD  T
Sbjct: 57  CYCANFIALFRVIFGTIFVYSPDGIT 82


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 52  SATKTMRRQLTNLDTDSLPPCPEDTSS 132
           SA+     QL  L TD L P P  TSS
Sbjct: 460 SASSVFNSQLQPLQTDLLSPLPSPTSS 486


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 208 AKIVPTVEAAKTEVPTKPPPMRLNELPLYDNP 303
           A+ VP   +A+T        M+LN +P Y  P
Sbjct: 97  AQSVPPTSSAETTADNSDTEMKLNPIPAYSVP 128


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 550 VGIGALSGYLFASKRGIPGRLFFTSLGALA 639
           V +G ++G +FA  R  P R   TSL   A
Sbjct: 81  VVVGGMAGNIFARNRIAPARWLITSLSTAA 110


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 588 KTRYTWSFVLHQSWSFGRWG 647
           K +Y +  +L ++WSFG  G
Sbjct: 291 KKKYKYRLILDETWSFGTCG 310


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 253 TKPPPMRLNE---LPLYDNPHQIYKDYLEDLEKCPKAKSKML 369
           TKP  M+ N+   +PL  NP  ++K   E     P+  +K+L
Sbjct: 200 TKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQEAAKIL 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,349
Number of Sequences: 5004
Number of extensions: 50346
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)