Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19m18
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 313 1e-86
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 310 1e-85
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 123 2e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 5e-11
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.18
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.96
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 0.96
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 0.96
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.1
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.8
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 9.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 313 bits (769), Expect = 1e-86
Identities = 137/173 (79%), Positives = 156/173 (90%)
Frame = +3
Query: 3 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPK 182
FPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+
Sbjct: 271 FPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPR 330
Query: 183 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 362
DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAE
Sbjct: 331 DVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAE 390
Query: 363 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 521
AW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 391 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 310 bits (761), Expect = 1e-85
Identities = 137/173 (79%), Positives = 154/173 (89%)
Frame = +3
Query: 3 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPK 182
FPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+
Sbjct: 267 FPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPR 326
Query: 183 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 362
DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAE
Sbjct: 327 DVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAE 386
Query: 363 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 521
AW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 387 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 123 bits (296), Expect = 2e-29
Identities = 63/175 (36%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Frame = +3
Query: 3 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPK 182
F +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K
Sbjct: 265 FFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMK 324
Query: 183 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 362
+V+ I +++TK + FV+W P + PP DL + + + N+T+I E
Sbjct: 325 EVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQE 376
Query: 363 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 518
+ RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.5 bits (145), Expect = 5e-11
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Frame = +3
Query: 3 FPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGD 170
F L +Y P + E + +V ++ P NQMV +P + +++ + +G+
Sbjct: 268 FLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Query: 171 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 350
P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+N T
Sbjct: 328 ADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHT 382
Query: 351 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 503
+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 383 SIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = +1
Query: 31 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 210
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 211 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 297
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 6.8
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = +1
Query: 31 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 210
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 211 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 300
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 163 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 297
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.18
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +1
Query: 19 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 192
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 193 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 285
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 67 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 246
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 247 QPVSRSVSTTS 279
PV+ + TTS
Sbjct: 584 TPVTTTNCTTS 594
Score = 25.4 bits (53), Expect = 6.8
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 19 TRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRP 198
T +S+P T + +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 428 TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPY--TST 484
Query: 199 SLPSKPSVLSNSSTGVQPVSRSVSTTS 279
+ S P +N +T S TS
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.96
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 75 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 200
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 0.96
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 203 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 60
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 0.96
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +1
Query: 367 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 540
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 541 EPKSTK 558
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 19 TRQSSLPRRPTMNSFPSPRSQTHASSPPTR 108
T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1251 TPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 25 QSSLPRRPTMNSFPSPRSQTHASSPPTR 108
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 199 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 285
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 180 WVRRHHGTAYSKPCTCHDGG 121
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 196 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 291
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 178 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 288
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 118 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 297
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,317
Number of Sequences: 5004
Number of extensions: 56965
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -