Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19m10
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.16
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 31 0.21
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 31 0.21
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 28 1.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 28 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 28 1.5
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.0
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 27 2.6
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 3.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 3.5
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 27 3.5
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 4.6
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 4.6
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 4.6
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 6.1
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 6.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 8.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.0
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 8.0
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 31.1 bits (67), Expect = 0.16
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Frame = +3
Query: 120 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 299
+P +LF KL N ++ + + L K + + +L+ S+ KL+ L E K+
Sbjct: 22 EPLEANLFGKLHNKLLICKAKKENLEK-KLAYQMMYSKLLK---SLPKLSSLEENKLTKL 77
Query: 300 TEVREELENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLL 479
E++EN +E +TEL + L L F ++++ +L
Sbjct: 78 KAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTL--SFGTLSLSNEINKVGPSASFML 135
Query: 480 KCSDNEKSSVRQRKKKMDKDGLVKMSSGVTE----QLLSVSRQLADTTQKSQNTLDNLVS 647
K SV+ +++++K GL++ S +E +L+ + D+ QK + + +
Sbjct: 136 K---EVHDSVQVLEQRLEKMGLIEKPSESSESSIYSILASLKHTNDSLQKKELSPHEIAE 192
Query: 648 SSSTVHGT 671
S S+ H T
Sbjct: 193 SPSS-HST 199
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 354 DTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMD 533
D Y L+ H++A L +DA IEKA+R D+ K + Q +K +
Sbjct: 507 DRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDI-------KGNEEQYLQKFE 559
Query: 534 KDGLVKMSSGVTEQLLSVSR 593
+ L K+ S + LL SR
Sbjct: 560 QAELKKLYSYEEKLLLQASR 579
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T T + +S T GT +E TAGTIT
Sbjct: 479 TSGTVEVVEPTAGTITETIVSGSKTFTSTFPASGTTSGTVEVVEPTAGTIT 529
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T T + ++ T GT +E TAGTIT
Sbjct: 689 TSGTVEVVEPTAGTITETIVSGSKTFTSTFPANGTTSGTVEVVEPTAGTIT 739
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + T T + ++ T GT +E TAGTIT
Sbjct: 409 TSGTVEVVEPTAGTITKTIVSGSKTFTSTFPANGTTSGTVEVVEPTAGTIT 459
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + ++ T GT +E TAGTIT
Sbjct: 374 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTIT 424
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + ++ T GT +E TAGTIT
Sbjct: 514 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTIT 564
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + ++ T GT +E TAGTIT
Sbjct: 654 TSGTVEVVEPTAGTITETIVSGSKAFTSTFPANGTTSGTVEVVEPTAGTIT 704
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + + + T GT +E TAGT+T
Sbjct: 899 TSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVT 949
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + + + T GT +E TAGT+T
Sbjct: 969 TSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVT 1019
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + +S T GT +E TAGTIT
Sbjct: 339 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 389
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + +S T GT +E TAGT+T
Sbjct: 549 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 599
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + +S T GT +E TAGTIT
Sbjct: 619 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 669
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + +S T GT +E TAGT+T
Sbjct: 724 TSGTVEVVEPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 774
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 555 SSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
+SG E + + + +T + +S T GT +E TAGT+T
Sbjct: 584 TSGTVEVVEPTAGTVTETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 634
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 507 VRQRKKKMDKDGLVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLV 644
++ +K ++ V SS E +VSR L+ T +K + LDN +
Sbjct: 438 IQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAI 483
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.9 bits (59), Expect = 1.5
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +3
Query: 258 EKLNEL-NEKGRAKITEVREELENLY---LYGKETGDTKY---DTELESQRHLLACLLKE 416
E+LNEL +G A + LE+++ L T DT + + EL ++ L A L E
Sbjct: 282 EELNELLPSEGYAILEPPPGYLESIHPELLQKGTTLDTYHVPQEQELPLEKELPAALPTE 341
Query: 417 FKDANINSMFAIEKAQR-EDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSR 593
+ F E + LLK D K ++ + +++ L+K+ +G S R
Sbjct: 342 IPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTIAELRERKILRLLLKVKNGTPPMRKSALR 401
Query: 594 QLAD 605
QL D
Sbjct: 402 QLTD 405
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 520 FLCRTDDFSLS-LHFNKSSLCAFSIANILFILASLNSLRRQAKRCLCDSNSVSYF 359
FL D S L+F+++SL + + FI S + ++ K D NS+SYF
Sbjct: 947 FLVEPDFLPASILYFDRASLASTNAYTDPFIPYSTDYTKKNPKEPTADVNSLSYF 1001
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +3
Query: 120 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 299
D Y L L+ D ++L+ Y + + ++ I E ++E+L NE+ ++
Sbjct: 351 DFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERM 410
Query: 300 TEVREELENLYLYGKETGDTKYDTE 374
+ ELE + D+ D E
Sbjct: 411 SPAEFELETTQEVEENDSDSHDDEE 435
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 618 SQNTLDNLVSSSSTVHGTQSELENTAGTIT 707
S+ L S+S ++ GT +E TAGT+T
Sbjct: 193 SEEFTTTLASASGSISGTVEVIEPTAGTVT 222
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 333 LYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLK 482
L K+ DT +S R L LL++++ + I FA++ ++EDL K
Sbjct: 67 LLAKKKSDTGLIGYCQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDLTK 116
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 369 TELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSV 509
TEL+ L + E K+ ++S+F Q+ +LL +D EK+ +
Sbjct: 62 TELKFISKYLQISIPETKEGPVSSLFKAVSEQKPELLGNTDFEKAQI 108
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 393 LLACLLKEFKDANINSMFAIEKAQREDL 476
+L C+LKE+ D + S FA+ A + L
Sbjct: 917 ILECMLKEYYDTFLKSPFAVPNAVQAQL 944
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 438 SMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMS 557
S AI K +L+ DN ++S+R K D+D L+ S
Sbjct: 24 STLAISKVISSKILQFEDNSETSLRHDLPKYDQDRLLLTS 63
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.6
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +3
Query: 411 KEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVS 590
KE ++ N + EK + + L S +V ++D +VK Q VS
Sbjct: 180 KEEREKIANELAHQEKQKERNKLLKSGRRNKAVLSFGDEVDMP-IVKKP---LRQKTPVS 235
Query: 591 RQLADTTQKSQNTLDNLVSSSSTVHGTQSELE 686
R TT+ S++ L+SSSS++H T S +
Sbjct: 236 RSSDTTTELSKD----LISSSSSIHSTYSSAQ 263
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 420 KDANINSMF--AIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSR 593
+D+ +N F A+ A+ ++L C +N+ S K++ + +V M + LLSV
Sbjct: 615 QDSIVNGDFEKAVLSAKEMEVL-CENNDLS------KQLTSEEIVHMKLLIQLGLLSVKV 667
Query: 594 QLADTTQKSQNTLDNLVSS 650
+ D S T++NL+ S
Sbjct: 668 KNGDYENSSFETIENLIES 686
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 372 ELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNE-KSSVRQRKKKMDK 536
+LE +R L L + +A + ++F+ + ++ED LK S+NE ++ R+ K ++K
Sbjct: 385 KLEEERALHEEKLMKM-EAEMKTIFSQKVQEKEDRLKQSENELRTRHREMKAALEK 439
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 522 KKMDKDGLVKMSSGVTEQLLSVSRQLADT 608
KK+D GL+ M++G+ LLS+S DT
Sbjct: 295 KKLDIIGLILMTAGLALVLLSISLASYDT 323
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 582 SVSRQLADTTQKSQNTLDNLVSSSSTVHGTQSELENTAGTI 704
S S + TT++ QN+ LV SS+ VH S L+N I
Sbjct: 444 SFSTKTLATTKEIQNS-PTLVESSTVVHHDPSYLQNQTSEI 483
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -2
Query: 532 SIFFFLCRTDDFSLSLHFNKSSLCAFSIANILFILASLNSLRRQAKR 392
+I FF T ++ H N S + +++I++I+ S+ + R
Sbjct: 410 TIIFFQMITQQINIISHTNNSDVVGIVLSSIMYIMQSMQDQWKSVMR 456
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 408 LKEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDK 536
+KEF + MF + +RE+ +K +++Q+K + ++
Sbjct: 273 IKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEE 315
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.0
Identities = 34/185 (18%), Positives = 80/185 (43%), Gaps = 7/185 (3%)
Frame = +3
Query: 150 LENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKITEVREELENL 329
LE+ + +N + ++ +Y + + +L S++ +NE ++ + + + +L+NL
Sbjct: 83 LEDERKLLENELSQIKEYLREKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNL 142
Query: 330 YLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCS-----DN 494
D E E ++ + ++K+ KDA +S + + Q K S +
Sbjct: 143 L----------SDKEKEVEKKI--TIIKDLKDALASSTHQVLELQHTQQEKASLQTNYEF 190
Query: 495 EKSSVRQRKKKMDKDG--LVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLVSSSSTVHG 668
E + Q+ ++ + L + GV ++LLS+ ++ + + + L + V +
Sbjct: 191 ELQKLTQKNSILENNNTWLSRELQGVNDKLLSLHQEASLEKSQLSSQLSDAVLEKDALQR 250
Query: 669 TQSEL 683
S L
Sbjct: 251 KVSSL 255
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 231 DILECRESMEKLNELNEKGRAKITEVREELENLYLY 338
+ ++ ES KLN++ EK + I+++ NL+LY
Sbjct: 280 ETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLY 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,686
Number of Sequences: 5004
Number of extensions: 57500
Number of successful extensions: 252
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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