Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m08
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...   144   9e-36
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...   140   1e-34
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    27   1.7  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   3.0  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   7.0  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   7.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.2  
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom...    25   9.2  

>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score =  144 bits (349), Expect = 9e-36
 Identities = 67/132 (50%), Positives = 91/132 (68%)
 Frame = +2

Query: 242 LKDAEEDIHSVIECRLFKHSGDAAFRLHTARSRNDQSATDTRLWMLASLPKLTSAIVELI 421
           L+ ++ED+H+  E RL +  GD A +LHT RSRNDQ  TD RLW+   + ++   ++ L+
Sbjct: 82  LEPSDEDVHTANERRLTEIIGDVAGKLHTGRSRNDQVTTDLRLWLCRKIKEVEVYVINLL 141

Query: 422 TVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDDVTRLEEQRSRLSRCPLG 601
            V   RAE EID+I +GYTHLQRAQPVRWSHFL+SHA  L  D+ RL +  +R+S+ PLG
Sbjct: 142 KVFTNRAEMEIDVIMSGYTHLQRAQPVRWSHFLMSHALPLLGDLGRLRQLYTRVSQLPLG 201

Query: 602 SGALXGCALTID 637
           +GAL G    +D
Sbjct: 202 AGALAGNPFNVD 213


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score =  140 bits (340), Expect = 1e-34
 Identities = 69/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
 Frame = +2

Query: 227 TENGKLKDAEEDIHSVIECRLFKHSGDA-AFRLHTARSRNDQSATDTRLWMLASLPKLTS 403
           T    L+ ++EDIH+  E RL +  G   A +LHT RSRNDQ  TD RLW+   L  +  
Sbjct: 75  TNKFTLQPSDEDIHTANERRLGEIIGTGIAGKLHTGRSRNDQVTTDMRLWLRDELDIIQK 134

Query: 404 AIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDDVTRLEEQRSRL 583
           ++V L+ V   RAE+++DII  GYTHLQRAQP+RWSHFLLSHA+++ +D+ RL++  SR+
Sbjct: 135 SLVGLLQVFVARAESDLDIIMPGYTHLQRAQPIRWSHFLLSHAFSILNDLDRLKQIYSRV 194

Query: 584 SRCPLGSGALXGCALTID 637
           +R PLG+GAL G    +D
Sbjct: 195 NRLPLGAGALAGNPFAVD 212


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 368 GGCQWQTGHYDYVLCVDERLHRHCA*ITCIRSQN 267
           GGC+ + G+YD    V + +  H   I CI + N
Sbjct: 215 GGCEGRIGYYDANGVVRDVVQNHLTQIFCIAAMN 248


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 YVLLTELHANNFRTEKAKFFEVYS 192
           +VL TE    N R +  KF+E+YS
Sbjct: 78  FVLFTEKKTTNARLQLQKFYELYS 101


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 224 LTENGKLKDAEEDIHSVIECRLFKHSGD 307
           +T NG LK++     S+I   +F  +GD
Sbjct: 145 VTTNGSLKESLRKYSSIIAVNIFSETGD 172


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 496 LSTL*MSIASRYNIYLIFSSSGK 428
           LS +   +A +   YLIFSSSGK
Sbjct: 102 LSLISFDLAKQKRTYLIFSSSGK 124


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 179 LRFILFQVEKEIEQELTENGKLKDA-EEDIHSVIE 280
           L+ +L   EKE+E+++T    LKDA     H V+E
Sbjct: 139 LQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLE 173


>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 395 LTSAIVELITVLATRAENEIDIISAGYTHLQRAQ 496
           LTS  +E ++ +  + ++E++ +S  Y  L RAQ
Sbjct: 10  LTSLSLEQLSEVIKQLDSELEYLSTSYGQLGRAQ 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,205
Number of Sequences: 5004
Number of extensions: 43908
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)