Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m08
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...   117   7e-27
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    28   5.4  
04_04_1219 + 31835854-31836105,31836481-31837152                       28   5.4  
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    28   7.2  
07_03_0811 - 21688781-21689830                                         27   9.5  
06_03_1051 + 27215113-27215658                                         27   9.5  

>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score =  117 bits (282), Expect = 7e-27
 Identities = 64/142 (45%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
 Frame = +2

Query: 218 QELTENGKL--KDAEEDIHSVIECRLFKHSGDAAFRLHTARSRNDQSATDTRLWMLASLP 391
           ++L ++GK   +   ED+H  IE  L +  G+ A +LHTARSRNDQ  TD RLW   ++ 
Sbjct: 477 EKLIQDGKFEWRTDREDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRLWCRDAID 536

Query: 392 KLTSAIVELITVLATRAENEIDIISAGYTHLQRAQPVRWSHFLLSHAWALRDDVTRLEEQ 571
           K+   I +    L   A   +D+I  GYTHLQRAQPV   H LLS+   L  D  RL   
Sbjct: 537 KILFRIKQFQVSLVLLASKYVDLIVPGYTHLQRAQPVLLPHLLLSYVEQLERDAGRLVNC 596

Query: 572 RSRLSRCPLGSGALXGCALTID 637
           R RL+ CPLG+ AL G  L ID
Sbjct: 597 RERLNFCPLGACALAGTGLPID 618


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 344  DQSATDTRLWMLASLPKLTSAIVELITVLATRAENEIDIISAGYTHLQRAQP 499
            ++ A   + W     PK+ +A++EL  +L   A   +D +      L+RA P
Sbjct: 1377 EKLAQSQKSWKAGDEPKIAAAMIELFHLLPPAASKFLDDLVTLVIDLERALP 1428


>04_04_1219 + 31835854-31836105,31836481-31837152
          Length = 307

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 402 DVSFGKDASIQRRVSVADWSL---RLRAVC 322
           D  FGKDA++QRR+ VA       RLRA+C
Sbjct: 206 DSGFGKDAAMQRRLLVAADRYGVDRLRAMC 235


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 320 LHTARSRNDQSATDTRLWMLASLPKLTSAIVELITVLATRA 442
           L  A SR ++ AT+TR +    + K T    E ++ + TRA
Sbjct: 188 LEVALSRKEKKATETRAYQAVPIVKTTWPFAEQLSRVYTRA 228


>07_03_0811 - 21688781-21689830
          Length = 349

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 329 ARSRNDQSATDTRLWMLASLPKLT-SAIVELITVLATRAENEI 454
           AR+RN  +ATD RL  + SL   T  A    + V A R   E+
Sbjct: 141 ARARNGSTATDIRLLEVTSLNSATPDATASWLRVAAPRLTGEL 183


>06_03_1051 + 27215113-27215658
          Length = 181

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 347 GHYDYVLCVDERLHRHCA*ITCIR 276
           GH  +V+C+D  L  HC+  TC R
Sbjct: 131 GHRFHVVCIDRWLLAHCSCPTCRR 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,974,381
Number of Sequences: 37544
Number of extensions: 270151
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)