Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m08
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              24   1.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   5.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   7.6  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 200 VEKEIEQELTENGKLKDAEEDIHSVIECRLFKHS---GDAAFRLHTAR 334
           + K+I  ++ + GK+   +E++   IEC + K S    D  F  H +R
Sbjct: 39  INKQIINDVND-GKINIEDENVQLYIECAMKKFSFVDKDGNFNEHVSR 85


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 476 THLQRAQPVRWSHFLLSHA 532
           +H+QR  P  WS  +  +A
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 476 THLQRAQPVRWSHFLLSHA 532
           +H+QR  P  WS  +  +A
Sbjct: 96  SHIQRTYPKEWSKIVQQYA 114


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 439 SSGKYRYKFYNSRCQLWQGCKHPKAGVSG 353
           + GK+ Y+ +N +   + G K+P   + G
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNPDGTIIG 205


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 303 AMQPFVYTQHVVVMTSLPLTPAFGCL 380
           ++ P  YT+ + + T + LT  FG L
Sbjct: 294 SLPPVSYTKAIDIWTGVCLTFVFGAL 319


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 303 AMQPFVYTQHVVVMTSLPLTPAFGCL 380
           ++ P  YT+ + + T + LT  FG L
Sbjct: 294 SLPPVSYTKAIDIWTGVCLTFVFGAL 319


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 233 NGKLKDAEEDIHSVIECRLFK 295
           NG +   +E++ S +EC + K
Sbjct: 49  NGNVNVEDENVQSYVECMMKK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,878
Number of Sequences: 438
Number of extensions: 2766
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)