Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.1  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   5.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   5.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   9.5  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 641  SWKRFLPSFVPLFREKNSKSL 579
            +WK   P+FV L +EKNS  L
Sbjct: 1336 NWKLGSPAFVTLVKEKNSSCL 1356


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   DFISLFTKCL*TRN*CKLGNYTSEKTQEIIIFRK 103
           D+  L  KC  +RN  +L N  +E T +++ FRK
Sbjct: 100 DYEGLLDKCSLSRNLLELINDYAEYTTQVLPFRK 133


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 115 TRKALDLALVSIQTVR-PVVSKLWYMTKTTIISTPVKPLVSNPVVTKVEDALDR 273
           T + + L+  +IQ  R P VS    +T+T I+   ++PL     +TK ++  +R
Sbjct: 7   TPQRIQLSSRAIQICRIPKVSFFVVLTETEILIYQIRPLTLISKITKSQNLFER 60


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 431 FSYKINSDNCPFTAFCIYLYIYLSFTASSKALKPPISIAWQYAKTEMAPPMTLN 592
           F  K +S   PF+++ + +++YL FT     +   I     +   E  PP+  N
Sbjct: 422 FWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIG----FRSREFVPPVRTN 471


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/63 (15%), Positives = 33/63 (52%)
 Frame = +1

Query: 181 WYMTKTTIISTPVKPLVSNPVVTKVEDALDRVTELLVVKMIQLRDKQLPGELEYLQKELE 360
           W++ + T ++ P KP+    V+  + + +  +    + K+++ + ++    ++ LQ+  +
Sbjct: 662 WFLDEETTVNKPNKPITKEAVLA-LREKMKALNARPIKKVLEAQGRKKMRTIKRLQRVAK 720

Query: 361 KVK 369
           K +
Sbjct: 721 KAE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,904
Number of Sequences: 5004
Number of extensions: 43457
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)