Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19m04
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    26   2.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   4.4  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   4.4  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   5.8  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 179 NNVNALQEFQKDVNLLLTKMIGDLLHSGNN 268
           +N++ L    KDV  ++TK I DLL+ G++
Sbjct: 126 DNLDKLNTELKDVTRVMTKNIEDLLYRGDS 155


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 68  FVCFTHRERTMISEMQLVVSINDTILHTLTNEI 166
           F CF +     I+++   VS ND +LHT   E+
Sbjct: 417 FKCFPNPCMFSINDVVFGVSTNDILLHTSREEL 449


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 TKMIGDLLHSGNNEMVEDEYCSTDDDQPPIS 322
           T  I  L ++  + M  + +CS+ DD  PI+
Sbjct: 296 TSSIQSLKNAPRDSMESESFCSSSDDAKPIT 326


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 201 SCKAFTLFWPDLISLVSVCNIVSF 130
           S  +FT+F+  +++L S+C + SF
Sbjct: 107 SISSFTMFFGSVLALGSICFLTSF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,100
Number of Sequences: 5004
Number of extensions: 27162
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)