Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l23
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.85 
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    27   2.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   2.6  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    27   2.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   4.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.9  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 285 SIWTR-YCTKLPWF*KTLPIVPEFLYTRSIK*RVRSS*CPKIRRILID 425
           S++TR Y    P   + L  VP  L +  ++  + ++ CPKIRRI+ D
Sbjct: 817 SVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANAWCPKIRRIIFD 864


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 407 TKNPDRHEVNIPI-GENKVVAAHVAFTKEMLVLDD 508
           T+NP  +  N+ I  EN + +   AFTK + VLDD
Sbjct: 8   TQNPLENVDNVKIESENAIPSNLQAFTKSLAVLDD 42


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 LRVYQDSSYFGTLRRSHPSF 372
           + VY+ +++FG  RR HP F
Sbjct: 277 ISVYRPTTFFGEFRRLHPQF 296


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 450 SPIGMLTSCLSGFFVFWDIKTIS 382
           SPI ++ S L+GF +  D+KTIS
Sbjct: 4   SPIELMRSTLAGFQIAPDVKTIS 26


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 113 LTKVQSHFLVPSEKLDKVTRRVIAPYAQIERKGLKESEQKARKYLDINRFNVFLDDEIDL 292
           LT++    +V  E L   T   I  + Q  +  L   E +   Y  ++ +N FL+ EID 
Sbjct: 243 LTRISPREIVLDESLKSFTTHPIYSFIQERKYFLSYVENR---YQSLDCWNKFLEKEIDP 299

Query: 293 DALLYETAM 319
             + Y T +
Sbjct: 300 SFIKYCTKL 308


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 320 VLKNFTNSSGVFVYTVDQMKGEIVLMSQNTKNPDRHEVNIPIGENKV 460
           V KNF +  G F   +D  KG+I  +S +  +P +H+  +   + +V
Sbjct: 17  VSKNFEHIRG-FKNAIDCFKGKIEFLSFDKVDPTKHDYYLVAEDERV 62


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 212 SLSVLFARTERSLVWSPYPVSRTGPRSEIVLWSSSSWTK-RLRRLAASRPV 63
           SL  LFA T+  L+W P   + +G     V+W  +      +  +A + P+
Sbjct: 653 SLQDLFAATKTGLLWFPLQHAPSGRVRMSVMWKPAQLNNDSISSMALATPI 703


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 272 LDDEIDLDALLYETAMVLKNFTNSSGVFVYTVDQMKGEIVLMSQ 403
           +D E      L++ AM ++   NSS  F Y   Q++GE + +S+
Sbjct: 48  MDIERQYSDQLHKLAMNMQEKNNSSFAFNYAWKQLEGETLEISR 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,931
Number of Sequences: 5004
Number of extensions: 59410
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)