Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l23
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0949 - 9434951-9435131,9435555-9435682,9436493-9436666,943...    30   1.5  
10_08_0598 + 19093417-19094220                                         30   2.0  
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881...    30   2.0  
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    29   4.7  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    28   6.2  
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448     28   6.2  
06_03_0963 + 26368959-26369462,26370900-26371205                       28   8.3  
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    28   8.3  

>12_01_0949 -
           9434951-9435131,9435555-9435682,9436493-9436666,
           9436978-9437193,9437376-9437522
          Length = 281

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 474 TWAATTLFSPIGMLTSCLSGFFVFWDIKTISPF 376
           TW A  ++SPI  LT C S + +   I+ + P+
Sbjct: 20  TWLAWPIYSPIRFLTICSSIYLITSKIEIVGPY 52


>10_08_0598 + 19093417-19094220
          Length = 267

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 550 RGEGSAVHASVKARRRMPRRLRNVQGRM 633
           RG+G+AV A+++ARRR  + L  + G M
Sbjct: 120 RGDGAAVAAALRARRRTEKELCRLAGAM 147


>03_02_0486 -
           8811539-8811610,8811725-8812231,8812327-8812551,
           8812648-8813064
          Length = 406

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 302 LYETAMVLKNFTNSSGVFVYTVDQMKGEIVLMSQNTKNP 418
           +Y ++++    T  +GV+V+T+D M GE VL  +  + P
Sbjct: 240 MYSSSVIFV-LTIGTGVYVFTLDPMYGEFVLTQEKVQIP 277


>05_07_0329 -
           29308867-29308932,29309040-29309159,29309245-29309364,
           29309566-29310123,29310199-29310258,29310839-29310904,
           29310993-29311103,29311167-29311257,29311349-29311449,
           29311534-29311641,29311737-29314205
          Length = 1289

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 14  KMMHEL--TPKNVKSTKSKQDVKQQDAEDALSKKS-LTKVQSHFLVPSEKLDKV 166
           K++ E+  T    +  +  ++V   DA+DAL KKS   K +  F V  E +DK+
Sbjct: 215 KLLAEIDDTSPPTEEAEPVEEVPAPDADDALGKKSKKKKKKGGFTVDDEDVDKI 268


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
 Frame = +2

Query: 11  IKMMHELTPKNVKSTKSKQDVKQQDAED--ALSKKSLTKVQSHFLVPSEKLDKVTRRVIA 184
           ++  H+   K +K  + + D+K ++  +  AL +KSL     H  + +E+L K  R  + 
Sbjct: 536 LERWHDNEEKRLKDREDELDIKYKEQGENLALKEKSLIDNIDHQRLENEELLKRERADLQ 595

Query: 185 PYAQIERKGLK-ESEQK--------ARKYLDINRFNVFLDDEIDLDALLYET 313
              Q+ R  L+ E E+K          K  ++NR   F+++E+   A L E+
Sbjct: 596 RNLQLHRHELEMEMEKKQASKERELEEKENELNRKMDFVENELKRAAELNES 647


>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
          Length = 495

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 236 WPSVRILSSLSVLFARTERSLVWSPYPVSRTGPRSEIVLWSSSSWT 99
           WP V  L+ L+     T  S V  P P++ T PR       S  WT
Sbjct: 447 WPHVDQLAPLADGSRSTPESRVADPVPITETSPRHSRRASLSLKWT 492


>06_03_0963 + 26368959-26369462,26370900-26371205
          Length = 269

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 621 YISKTAWHSPSGFNT 577
           Y+S+T W  PSGFN+
Sbjct: 182 YVSETVWTKPSGFNS 196


>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
            21443368-21443414,21443480-21443543,21443627-21443707,
            21443781-21443823,21443912-21443961,21444262-21444343,
            21445045-21445120,21445451-21445558,21445782-21445833,
            21445911-21446570,21446652-21448067
          Length = 969

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 116  TKVQSHFLVPS--EKLDKVTRRVIAPYAQIERKGLKESEQKARKYLDINRFNVFLDDEID 289
            T + S+  +PS  E +   T   + PY      G+KE    A++ LD+  F    +    
Sbjct: 855  TNLASNISIPSISEAVRLSTAMDVKPYTSEASNGVKEEASPAKEALDVTSFRQRAE---A 911

Query: 290  LDALLYETAMVLKN 331
            L+ LL  +A +L+N
Sbjct: 912  LEGLLELSADLLEN 925


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,741,095
Number of Sequences: 37544
Number of extensions: 384701
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)