Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l23
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.53 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 208 FPFYLRVRSDHSSGHLIQFLGRD 140
           FP+Y+  R  +S  HLI    RD
Sbjct: 335 FPYYMYSREQYSQSHLISNENRD 357


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 687 PSKPRSQQCTQCHHHMAQHASLY 619
           P + R     Q HHH+  H  LY
Sbjct: 61  PPEHRDLPIYQSHHHLHHHQVLY 83


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 284 IDLDALLYETAMVLKNFTNSSGVFVYTVDQMKGEIVLMS 400
           I + ALL +T  +   F     + ++TV++  GE +LM+
Sbjct: 129 ISMGALLGKTTYMQLVFMGIVELIMFTVNKYVGEHLLMT 167


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 164  VTRRVIAPYAQIERKGLKESEQKARKYLDINRFNVFLDDEI-----DLDALLYETAMVLK 328
            VT  +I  Y QI  K L E  Q     L      + ++D++     DL+   +ET +VL+
Sbjct: 1005 VTPELIYEY-QIHPKTLNEVLQADMNALKNFNQPLLVNDQLGQLYLDLEVEGFETKLVLE 1063

Query: 329  NFTNSSG 349
            +   SSG
Sbjct: 1064 DGITSSG 1070


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,833
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)