Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l22
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955     31   1.0  
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730...    28   5.5  
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    28   7.2  
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888...    27   9.6  

>08_02_0418 + 16908077-16908156,16908307-16908595,16908686-16908955
          Length = 212

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -2

Query: 546 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNLTET 397
           RPPKSR   P        +  SKH   V  HC     P H    C L +T
Sbjct: 51  RPPKSRRKAPHEVQGKHGLKMSKH--GVEMHCKYCNEPGHNQRGCKLKKT 98


>08_02_0402 -
           16769239-16769504,16769842-16770016,16772762-16773028,
           16773156-16773368
          Length = 306

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 463 QHPLLADDGTPAPML-AVQPNRNSVRIILQAHKARLGGEP 347
           Q P + D G    +L AV P RN  R  +  H +R GG P
Sbjct: 120 QAPHINDHGKVHDVLQAVIPRRNQTRQRIHIHTSRAGGSP 159


>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = -2

Query: 546 RPPKSRNTDPMRTDTSSFVT*SKHCAAVSTHCLLTMAPPHQCLPCNL 406
           RPPKSR   P      +    SKH   V  HC     P H    C L
Sbjct: 242 RPPKSRRKAPHEVQGKNGSKMSKH--GVEMHCSYCKEPGHNKKGCPL 286


>06_01_1084 +
           8883301-8883515,8883736-8884063,8884764-8885022,
           8885581-8885681
          Length = 300

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 479 SIARRSAPIAC*RWHPRTNACRAT*QKQCTDNP 381
           S  R S   +C RW  R++ C A   K  TD P
Sbjct: 126 SSTRPSGTSSCSRWRSRSSVCVAQAAKCATDRP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,084
Number of Sequences: 37544
Number of extensions: 376682
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)