Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l13
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173...    33   0.16 
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509...    29   2.6  
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615...    28   6.0  

>02_01_0262 -
           1734447-1735090,1735219-1735367,1735458-1735633,
           1735719-1735853,1737039-1737120,1737307-1737461
          Length = 446

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -2

Query: 311 IPTPYKFE---LTFTLSRMLKHSH*AHRSRSFD*DRPASTEAAF*VLANNKST 162
           +PTP   E   +T +L  +++H+H + RS S + DR AS      + AN KST
Sbjct: 287 LPTPTLMENQHITHSLGAVMRHTHSSIRSLSNNFDREASRSLPLNIPANRKST 339


>04_01_0385 -
           5095410-5095445,5095595-5095796,5095905-5095979,
           5096460-5096484,5097032-5097137
          Length = 147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 328 RKGRC--SNCIKMYVNFYAFYFYCVDGC 405
           R  RC  SNC+K+Y   ++ Y YC   C
Sbjct: 57  RSCRCVKSNCVKLYCPCFSAYGYCSQNC 84


>08_02_0744 - 20659326-20659580,20659748-20660005,20660103-20661575,
            20661677-20661835,20661948-20662074,20662155-20662486,
            20662574-20663383,20663772-20664110,20664187-20664340,
            20664427-20665143,20665699-20665967
          Length = 1630

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 352  IKMYVNFYAFYF-YCVDGCTSSQPTCY*AVTGAYR 453
            ++ +V F   YF Y ++  TS  PTC   + G Y+
Sbjct: 1426 LESFVEFAPQYFRYLMESLTSGSPTCLAKIVGVYQ 1460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,836
Number of Sequences: 37544
Number of extensions: 332632
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)