Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19l11
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 109 4e-25
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.033
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.058
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.077
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 31 0.18
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 2.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.8
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 3.8
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 26 5.1
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 6.7
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 25 6.7
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 25 6.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 6.7
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.7
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 8.8
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 109 bits (261), Expect = 4e-25
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Frame = +1
Query: 313 VLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAYPE 492
+ + E+ + CPLCME +++ D +F PC CGY++CRFCW+ I+E NG CPACR+ Y E
Sbjct: 7 IYSSEDEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTE 66
Query: 493 NPADFIPLSQEQVAA---IKTEKKAREQKRRNKTLESRRALANVRV 621
+ P++ E+ K E+K RE++R+ L +R+ LAN+RV
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRV 112
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.1 bits (72), Expect = 0.033
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 322 QSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFC-WNRIREGENGLCPACR-KAYPE- 492
Q ++ +ECP+C E L+ + CG+ C C N ++E ++ CP CR K Y +
Sbjct: 77 QKIKKTLECPICTEALQ----RPFTTHCGHTYCYECLLNWLKESKS--CPTCRQKLYTQP 130
Query: 493 NPADFIPLSQEQVAA 537
+PA + VAA
Sbjct: 131 SPAYLVYEIMNVVAA 145
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.058
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 289 LALGSRMSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCW----NRIREGEN 456
L L S+ ++ +E + C +C E + D + C + CR C N +GEN
Sbjct: 692 LVLASKRKTVDIENQENIVCKICDEVAQ-DAIE---SRCHHTFCRLCVTEYINAAGDGEN 747
Query: 457 GLCPAC 474
CP+C
Sbjct: 748 VNCPSC 753
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 316 LNQSGE-EQVECPLCMEPLEVD 378
+N +G+ E V CP C PL +D
Sbjct: 739 INAAGDGENVNCPSCFIPLSID 760
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.9 bits (69), Expect = 0.077
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 331 EEQVECPLCMEPLEV-DDLHFYPCT-CGYQICRFCWNRIREGENGLCPACRKAYPEN 495
+E+ EC +CME ++ DD+ PC ++ C W R+ NG C CR N
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRV----NGTCAICRAPVDPN 443
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 30.7 bits (66), Expect = 0.18
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Frame = +1
Query: 349 PLCMEPLEVDDLHFYPCTCGYQICRF-CWNRIR-------EGENGL-CPACRKAYPENPA 501
P+C + L + H + CGY C F +I+ + ENG C CR+ Y P
Sbjct: 143 PMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECYEGRPG 202
Query: 502 --DFIPLSQEQVAAIKTEKKAREQKRR 576
D L + + +T +K KRR
Sbjct: 203 YNDSNGLIRSRFQTFETFRKPLADKRR 229
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 310 SVLNQSGEEQVE-CPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENG----LCPAC 474
S+++ + V+ CP C + + CG ICRFC I ++ +C +C
Sbjct: 268 SIVHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPLLICMSC 327
Query: 475 RKAYPEN 495
+ Y N
Sbjct: 328 NQNYFRN 334
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 400 TCGYQICRFCWNRIREGENGLCPACRKAYPENPADFIPLSQE 525
TCG+ C FC + + CP C+ +N A +I S++
Sbjct: 1106 TCGHLYCSFCLEAWLK-HSSSCPMCKTKLNKNNAYYIGESRD 1146
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 400 TCGYQICRFCWNRIREGENGLCPACRKAYPEN 495
+C + C FC E+ +CPACR E+
Sbjct: 43 SCSHTFCSFCIRDYLR-EHPMCPACRAPEQES 73
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 512 GMKSAGFSGYAFRQAGQRPFSPSRIRFQQNRH 417
G ++ F G +F G R SP++ F N+H
Sbjct: 507 GRPTSPFMGSSFSNMGSRSTSPTKEGFASNQH 538
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 446 KARTAFAQLVGRHTQKTRQTSFLSVKSRWQ 535
K R+ AQL R TQ++++ SFL K+ Q
Sbjct: 387 KLRSTNAQLTDRITQESKKASFLEQKASEQ 416
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 451 RLLEYDSSKTDIFGIHMYTGRSGGRPLPRVP 359
+LL DSS D+ H+ T G P+P+VP
Sbjct: 788 QLLAEDSSTDDVSLPHLDTIDLDGSPVPKVP 818
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 6.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Frame = +1
Query: 403 CGYQICRFCWNRIREGENGLCPACRKAY 486
CG+ C C E + CP C +
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPF 682
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 517 SQEQVAAIKTEKKAREQKRRNKTLESRRALA 609
S+EQ+ A EKK+ QK+R L ++RA A
Sbjct: 29 SREQIVAAAAEKKSARQKKRE--LIAKRAEA 57
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 424 FCWNRIREGENGLCPACRKAY 486
FC R EG LC AC AY
Sbjct: 383 FCVRRGPEGNKSLCNACGVAY 403
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.7
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +1
Query: 325 SGEEQVECPLCMEPLEVDDLH 387
SG + V+CP+C + + ++D++
Sbjct: 2 SGPDHVQCPVCAKTVTMNDIN 22
>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 496 PADFIPLSQEQVAAIKTEKKAREQKRRNKTLESRRA 603
P FIP + E + KT + R +RR L +RRA
Sbjct: 75 PNFFIPFTPEVIKEQKTSRPIRASRRR-ANLRNRRA 109
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 340 VECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIR 444
VE P E + CG++ C CW+ IR
Sbjct: 243 VETPTAAEVKAAETSGTKIVKCGHRSCPICWDSIR 277
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 403 CGYQICRFCWNRIREGENGLCPACRKAYPENPADFIPL 516
CG+ C C + E CP C + + +D IP+
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPICGRGF--GASDVIPI 678
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,591
Number of Sequences: 5004
Number of extensions: 47897
Number of successful extensions: 178
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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