Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    29   0.44 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   5.5  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   9.5  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   9.5  

>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
 Frame = +3

Query: 264 PKPKKVDVIVLNSKSVTLVYCLIITVGAL--------AFSIFQKEFIKIFTEKNLAVNNL 419
           P PK+ +  +    SV++V  LI  +G           +S+    F + F   +LAV  +
Sbjct: 180 PPPKRANYFLSICFSVSVVVSLIGLLGVWQKLLPKSNVYSVSSSSFARTFGFASLAVAEI 239

Query: 420 MIWIFHKVQSIFKNTARCCCIAVVECLIEIKNI 518
           +++I+    SIF+  A    +A++ C I  K++
Sbjct: 240 LLFIYWTSLSIFQFGAYAAGVAIM-CGIAAKSL 271


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 195 KPNLGIYQGVYFHSTSRLKNYTLPKPKKVDVIVLNSKSVTLVYCLIITVGALAFSIFQKE 374
           K +LG  + +  H     K YT P+  K ++ VL+ KSV      +      A S   +E
Sbjct: 130 KEDLGFIRDM--HRLLSYKGYTFPEIDKENLAVLSQKSVLKTAEELEKEDREAMSAKLQE 187

Query: 375 FIKIFTEKNLA-VNNLM 422
            I+  T  +LA  N LM
Sbjct: 188 LIRRGTPADLAEANKLM 204


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 192 TKPNLGIYQGVYFH 233
           +KPN G YQG+ FH
Sbjct: 92  SKPNGGAYQGIGFH 105


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 171 QIILKRNTKPNLGIYQGVYFHSTSRLKNYTLPKPKKVDV 287
           Q I   +  PN G++QG +   ++ + N+  P   ++ +
Sbjct: 459 QSINGNSPSPNEGVFQGSFSPESAPVNNHAFPHTSRMQI 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,380
Number of Sequences: 5004
Number of extensions: 50031
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)