Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l06
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645...    33   0.20 
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682...    31   1.1  
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121           27   9.9  
08_02_0854 - 21905054-21906308,21906396-21907300                       27   9.9  
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990     27   9.9  

>04_04_1138 -
           31162440-31163488,31163910-31164164,31164386-31164500,
           31164523-31164579,31164580-31164632,31164721-31164981,
           31165243-31165293,31165395-31165430,31165815-31166040,
           31166082-31166132,31166346-31166465
          Length = 757

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 211 IPKLGFVFLFSIIWRLHIASHMATEMPTSHLNAIYITIIASYIQVIALNE*FLIK 47
           +P +GFV+        HI SH  T +P  H   +++ +    +  + ++E FL++
Sbjct: 514 VPGIGFVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPMDERFLVR 568


>09_06_0291 -
           22066550-22067610,22067721-22067975,22068093-22068207,
           22068329-22068381,22068467-22068724,22069110-22069160,
           22069577-22069822,22070427-22070652,22070984-22071100
          Length = 793

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 211 IPKLGFVFLFSIIWRLHIASHMATEMPTSHLNAIYITIIASYIQVIALNE*FLIK 47
           +P +G V+        HI SH  T +P  H   +++ +    +  +  +E FL+K
Sbjct: 546 VPGIGLVYTELASGVPHIFSHFITNLPAIHSTLVFVCVKYLPVYTVPPDERFLVK 600


>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
          Length = 798

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 468 RCCCIAVVECLIEIKNIYRNTLIKMRSSGYEXKYN 572
           RC  IA+ E L  + + ++ T+ K+R  GY+   N
Sbjct: 322 RCTAIALKEALFGMISSHKLTISKIRGQGYDGASN 356


>08_02_0854 - 21905054-21906308,21906396-21907300
          Length = 719

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 468 RCCCIAVVECLIEIKNIYRNTLIKMRSSGYEXKYN 572
           RC  IA+ E L  + + ++ T+ K+R  GY+   N
Sbjct: 322 RCTAIALKEALFGMISSHKLTISKIRGQGYDGASN 356


>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
          Length = 798

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 468 RCCCIAVVECLIEIKNIYRNTLIKMRSSGYEXKYN 572
           RC  IA+ E L  + + ++ T+ K+R  GY+   N
Sbjct: 322 RCTAIALKEALFGMISSHKLTISKIRGQGYDGASN 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,296
Number of Sequences: 37544
Number of extensions: 246819
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)