Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19l06
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81527-13|CAB04272.2| 343|Caenorhabditis elegans Hypothetical p... 31 0.54
AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 31 0.54
AF077541-11|AAM54171.1| 55|Caenorhabditis elegans Cysteinyl tr... 30 1.6
Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine re... 29 2.2
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 28 6.7
AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical ... 28 6.7
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li... 27 8.8
AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine r... 27 8.8
>Z81527-13|CAB04272.2| 343|Caenorhabditis elegans Hypothetical
protein F35E12.5 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 409 TAKFFSVNIFMNSF*NIEKANAPTVMIKQ*TRVTLFEFNTMTSTFFGFGN 260
T FF+ + N F + AN V +K +R T F TM TF GN
Sbjct: 136 TGTFFNTTLEANKFTTVRAANNDQVALKYGSRETGFHDETMYQTFVFDGN 185
>AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical
protein Y38E10A.28 protein.
Length = 397
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 300 SKSVTLVYCLIITVGALAFSIFQKEFIKIFTEKNLAV-NNLMIWIF 434
SKSV L YC I+ + L F++ Q +I ++++ + N+L +WIF
Sbjct: 282 SKSVKLTYCQILFI-ILFFALSQAYYISNCSKEHCPLENDLAVWIF 326
>AF077541-11|AAM54171.1| 55|Caenorhabditis elegans Cysteinyl trna
synthetase protein2, isoform b protein.
Length = 55
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 426 WIFHKVQSIFKNTARCCCIAVVECLIEIKNIYRNTLIKMR 545
WIF+ V+S RC C V + E++ IY++T++K R
Sbjct: 19 WIFYGVRSWI---VRCICEKGVVKISELRKIYQSTVVKDR 55
>Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical
protein T22C8.1 protein.
Length = 269
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +3
Query: 291 VLNSKSVTLVYCLIITVGALAFSIFQKEFIKIFTEKNLAVNNLMIWIF 434
++ ++ +L + L++T+ A +F + +FT K + + + IW++
Sbjct: 22 IMLTEQASLYFTLLMTINRFAVFVFPS-ILSVFTTKGIHIISTFIWVY 68
>AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine
receptor, class i protein54 protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = -2
Query: 547 LLILINVFRYIFLISIKHSTTAIQQHRA 464
+L+L+N+ R + ++ +K S++ Q+HRA
Sbjct: 210 ILVLVNILRMLTILKLKISSSNYQKHRA 237
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 423 IWIFHKVQSIFKNTARCCC-IAVVECLIE 506
++++H+V ++ KNT+R C + ++E IE
Sbjct: 418 VFVYHEVPAVIKNTSRICAELLIIERDIE 446
>AC006807-4|AAK84618.1| 904|Caenorhabditis elegans Hypothetical
protein Y58A7A.4 protein.
Length = 904
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 230 KINTLIYT*VRLCISFQYYLETAHRQPHGDRNADKPLKRNIHHDYCKLYTSYSFKRVI 57
KIN I T C+ + YY R R+ D+ LK + YC + T Y+ R+I
Sbjct: 723 KIN--INTETMNCVYYPYYYPYPARYREQQRSYDQSLKYADNGPYCPVATVYTDIRLI 778
>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
protein F31D5.5 protein.
Length = 1788
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 279 VDVIVLNSKSVTLVYC 326
+D+I LN KSVT+VYC
Sbjct: 674 LDLIQLNYKSVTMVYC 689
>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
protein MTH-1 protein.
Length = 1757
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 279 VDVIVLNSKSVTLVYC 326
+D+I LN KSVT+VYC
Sbjct: 643 LDLIQLNYKSVTMVYC 658
>AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine
receptor, class i protein57 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -2
Query: 652 SLHQILSISLKKHNPL*FC--I*SMVYTLLYFXSYPELLILINVFRYIFLISIKHSTTAI 479
S + + S+ + N L F I +++ LL F + + +L N+FR + + ++ S T
Sbjct: 174 SFQSLPNFSIYQANALLFIMVITAVIGGLLAFSFF--MAVLYNIFRMLSFMKVQMSDTTY 231
Query: 478 QQHRA 464
++HRA
Sbjct: 232 KRHRA 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,071
Number of Sequences: 27780
Number of extensions: 268701
Number of successful extensions: 681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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