Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l02
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    80   2e-16
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.53 
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   0.70 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   0.70 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   3.7  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   4.9  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   6.5  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   6.5  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    25   6.5  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   8.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.6  

>SPAC1783.06c |atg12|apg12|autophagy associated protein
           Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 42/124 (33%), Positives = 74/124 (59%)
 Frame = +1

Query: 76  DEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKKKWAVD 255
           +++L  E  SQ+   +E     ++   N+   K ++ +V++  KA G  P+++K  ++++
Sbjct: 11  EKRLATEEDSQN-EDIENQLPSIETIINTYREKENR-RVNLRFKAIGRTPLLRKTVFSIN 68

Query: 256 AEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYECFGTDGKLVLHYCKS 435
           A +    +  F+KK L L  +  L LYVN +FAPSPD+IV NLY+ F  D  L+++YC +
Sbjct: 69  ASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPSPDEIVGNLYDNFAIDSHLLINYCIN 128

Query: 436 QAWG 447
            A+G
Sbjct: 129 VAFG 132


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 61  KSKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKK 240
           KSK    K   E  S +  G E  ++  D+ E  + +  +    D    AT +AP  KKK
Sbjct: 560 KSKKKTSKAQQEANSTTAEGKE--KLSGDSTETGNSTNKEASTEDTKANATASAPNKKKK 617


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 277 IMEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYEC 393
           +M F+K Y   E  EK     N TF PS   +V     C
Sbjct: 415 LMNFMKTYFPREIKEKFEENENDTFTPSSISVVSGQNNC 453


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 64  SKMSDEKLIDETQSQS--VAGMEALRIEVDNKENSDPSKSDKLKVDIL-LKATGNAPIMK 234
           SK +++K ++ET+S+   V   E   IEVD+KE    SK    KV+    K T   P   
Sbjct: 477 SKETEDK-VEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKD 535

Query: 235 KKKWAVD-AEK 264
             K A + AEK
Sbjct: 536 DNKEANEKAEK 546


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 70  MSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVD 195
           MSDEKL  E  S S  G +  R    +     P    +LK++
Sbjct: 54  MSDEKLSSEASSHSTLGQQQARDGRQSPSKEAPFGEGELKLE 95


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 235 KKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVN 342
           KK W  +A +    I+EF+++ +   AD  L LY N
Sbjct: 504 KKFWESNAAEYCLAILEFIERCIYYSADRSLELYDN 539


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 251 TAHFFFFIIGAFPVAFSRMSTF 186
           T   F F IGAF +AF+   TF
Sbjct: 634 TLDIFMFTIGAFAMAFTTYMTF 655


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 124 EALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKK 237
           EA + E+DN+ N+D S+S +   + L KA     + KK
Sbjct: 54  EAFKNELDNRNNAD-SQSLQSSTESLFKADSEDYLCKK 90


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 181 YLILMDHYF--LCYQLLFSMLPFQPLIGSASHL 89
           +L+++D     +CY  LF   PF P +   SHL
Sbjct: 489 FLVVLDPISKNICYLWLFLYCPFTPFLTVFSHL 521


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 286 FVKKYLKLEADEKLFL 333
           +VKK LKL AD+K+F+
Sbjct: 93  YVKKVLKLPADKKVFV 108


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 364 DQIVRNLYECFGTDGKLVLHYCKSQAW 444
           + +VR  YE  G D + VL+Y  SQ W
Sbjct: 269 EAVVRETYEESGVDVEKVLYYA-SQPW 294


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 196  CRLLIYLILMDHYFLCYQLLFSMLP 122
            C++         +FLC+ LLF MLP
Sbjct: 1767 CKMTELNFFAADFFLCHLLLFLMLP 1791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,246
Number of Sequences: 5004
Number of extensions: 40397
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)