Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19l02
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532... 78 5e-15
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 43 1e-04
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 43 2e-04
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 29 2.1
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 27 6.5
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 27 8.7
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105... 27 8.7
>06_01_0726 +
5319809-5319839,5319918-5319976,5320859-5320927,
5321009-5321071,5321360-5321419
Length = 93
Score = 77.8 bits (183), Expect = 5e-15
Identities = 33/91 (36%), Positives = 61/91 (67%)
Frame = +1
Query: 175 SDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFA 354
+++ KV + ++TGNAP +K+ K+ + + I++F+++ + + +FLYVN F+
Sbjct: 6 AEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIH---QDTVFLYVNSAFS 62
Query: 355 PSPDQIVRNLYECFGTDGKLVLHYCKSQAWG 447
P+PD+++ +LY FG DG+LV++Y S AWG
Sbjct: 63 PNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/91 (26%), Positives = 44/91 (48%)
Frame = +1
Query: 175 SDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFA 354
SD++ V + + P + KKK+ V A+ +G + V+K +KL ++ +F++V T
Sbjct: 27 SDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLP 86
Query: 355 PSPDQIVRNLYECFGTDGKLVLHYCKSQAWG 447
P+ + E DG L + Y +G
Sbjct: 87 PTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/91 (26%), Positives = 44/91 (48%)
Frame = +1
Query: 175 SDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADEKLFLYVNQTFA 354
SD++ V + + P + KKK+ V A+ +G + V+K +KL ++ +F++V T
Sbjct: 191 SDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLP 250
Query: 355 PSPDQIVRNLYECFGTDGKLVLHYCKSQAWG 447
P+ + E DG L + Y +G
Sbjct: 251 PTASLMSAIYEENKDEDGFLYMTYSGENTFG 281
>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 124 EALRIEVDNKENSDPSKSDKLKVDILLKATGNAPIMKKKKWAVDAEKPIGW 276
E I+ D +EN D +++ V KAT P + +K + D K I W
Sbjct: 1004 EPKEIDDDQEENEDNDAEEEVNVQDE-KATRTPPSTRSRKSSADTRKEIKW 1053
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 364 DQIVRN-LYECFGTDGKLVLHYCKSQAWG*RLML 462
D+I+ L C G +G LHY K AW RL L
Sbjct: 257 DRIIHEVLLSCKGENGSGSLHYEKRNAWRKRLAL 290
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +1
Query: 247 AVDAEKPIGWI----MEFVKKYLKLEADEKLFLYVNQTFAPSPDQIVRNLYECFGTDGKL 414
AV ++ PIG + + ++KY ++ F + T + PD++ + C T+ L
Sbjct: 424 AVFSQPPIGQVGLTEEKAIEKYGDVDVYTSNFRPLRATLSGLPDRVYMKVIVCANTNKVL 483
Query: 415 VLHYCKSQA 441
+H C A
Sbjct: 484 GVHVCGEDA 492
>07_03_0587 +
19708841-19709282,19709693-19709883,19710429-19710568,
19710955-19711380,19711540-19712685,19712805-19712934,
19713257-19713492,19713575-19713710,19713793-19713869,
19714692-19714798,19714896-19714996
Length = 1043
Score = 27.1 bits (57), Expect = 8.7
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +1
Query: 100 QSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKATGNAPI---MKKK--KWAVDAEK 264
Q SV+ ++ L ++EN +P SD +KV I G++P+ ++KK K A D K
Sbjct: 606 QHGSVSNVDLLE---GHEENCNP--SDNVKVVIDTATLGSSPLVLQLEKKYAKLAKDILK 660
Query: 265 PIGWIMEFVKKYLKLEADEKLFLYVNQTF 351
GW ++ +K + + + V++TF
Sbjct: 661 KFGW-LDLTRKVRVSQDNIHVLFPVSKTF 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,043
Number of Sequences: 37544
Number of extensions: 223139
Number of successful extensions: 429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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