Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19l01
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 31 0.20
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 30 0.36
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 3.3
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 5.8
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 5.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 5.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.7
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 30.7 bits (66), Expect = 0.20
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +3
Query: 423 ENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSF 602
EN+S+ T+ QP Q + S M+ TTE+ E S Q+ S N R R + SS
Sbjct: 2208 ENESKE-EETR-QPEVNIQPEEPINTSDMEGVTTEANEIGSYQEPSLINIRGREVDVSSL 2265
Query: 603 ASDVSFRL 626
D +F L
Sbjct: 2266 GIDPTFLL 2273
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 417 IGENDSQTFHSTKSQPSTVSQSNTFRD----VSPMQTTTTESTEYNSGQDLSQDNERQ 578
+GENDS TF + ++ + S ++ + VSP++ E+ E +S + QD+E Q
Sbjct: 1966 VGENDSTTFEAMENAFTETSDNDDHLEEADHVSPVEIDFLENDENSSSE---QDDEFQ 2020
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 445 IQLNHSHQLSLKVILFEMSRPCKQQQLNQLNTIL 546
I+ N SH+LSL + EM+ P + +++TIL
Sbjct: 1106 IRNNSSHELSLVAFIREMAMPVPNDEFKKISTIL 1139
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Frame = +3
Query: 393 ITNSDLFSIGENDSQTFHSTKSQPSTVS----QSNTFRDVSPMQTTTTESTEYNSGQDLS 560
+ +S L + TF+ TKS S+V S++F +P+ T++ ++ S QD +
Sbjct: 237 LESSSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDST 296
Query: 561 QDNERQRRLSNSSF----ASDVSFRLPSYDT--PMMY--HLQSDIEV 677
+ ++ S+ +S ++ PS + P Y L +++EV
Sbjct: 297 TIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEV 343
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 462 PSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSS 599
PST SNT +D + S ++S S DN+ QR +++S
Sbjct: 798 PSTFFSSNTKKDNIEEENLEPHSFSFDSTLASSSDNDEQRDFASNS 843
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +3
Query: 396 TNSDLFSIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNER 575
T+S + N + T + T S S + TT T ST ++ + +
Sbjct: 610 TSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSST 669
Query: 576 QRRLSNSSFASDVSFRLPSYDTP 644
+SSF S+V+ + TP
Sbjct: 670 SFASESSSFYSNVTTSSSTVSTP 692
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 399 NSDLFSIGENDSQTFHSTKSQPSTVS-QSNTFRDVSPMQTTTTESTEYNSGQDLSQDNER 575
++D + N++ K PST S Q + S + T T STE G+D+ +
Sbjct: 138 DADKYGFIFNENSVPRVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTEKTKGKDIFSNARN 197
Query: 576 QRRLSNSS 599
Q+ NSS
Sbjct: 198 QK--GNSS 203
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 420 GENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSN 593
G+N Q ++T+++ + F D P + ++ DL NE Q SN
Sbjct: 88 GQNHCQKQNTTQTKTTISGSEQLFNDEKPKKIIYSKGGNDGKEDDLQNVNEPQDAYSN 145
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 606 SQKNC*TVSFDAHYLDLSLVQNCIQLIQLLLFAWARHLEKYYFERQLMAVI 454
S KN SF ++ ++ + + + LLL + ++KYY E +L +
Sbjct: 836 SSKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTV 886
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 399 NSDLFSIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLS 560
NS+L D F ++ SQ + SQ + +SP+ T S ++ D+S
Sbjct: 135 NSELDLSNFQDDLDFENSISQKNEFSQKSPSVPLSPVSTFPASSISLDASSDVS 188
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 465 STVSQSNTFRDVSPMQTTTTESTE-YNSGQDLSQDNERQRRLSN 593
ST+ +N+F ++ ++T + +ST+ NS + + +NE + N
Sbjct: 1320 STIMSNNSFTSLNGLRTDSADSTDALNSNLNNTVENEANQTALN 1363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,412
Number of Sequences: 5004
Number of extensions: 45157
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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