Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19l01
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    33   0.16 
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    30   2.0  
08_02_1132 - 24530921-24532906                                         29   2.6  
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665...    28   6.0  
10_07_0028 + 12019827-12020000,12020083-12020505,12020583-120206...    28   7.9  
03_05_0173 + 21502765-21504216                                         28   7.9  

>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 456 SQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSFASD 611
           +QP+ + +SN   D S  Q  TT+S  Y     L+++  R  +L+NS    D
Sbjct: 137 AQPTELHESNGNNDTSNFQEETTQSDTYLGDAMLNENGSRDYQLNNSGADDD 188


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 429 DSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSG 548
           DS   H         + S +F D S + T  TEST +NSG
Sbjct: 658 DSDLDHQISRTEEFENSSLSFSDSSDLSTLETESTSFNSG 697


>08_02_1132 - 24530921-24532906
          Length = 661

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 141 NSQILTKQKNRDLLNLTLYEDNSNVMRFT 55
           N   L KQ+ RDL  + +  DN  VMRFT
Sbjct: 117 NDAKLLKQRTRDLYQVNMMLDNLPVMRFT 145


>07_02_0028 +
           11964941-11964991,11965259-11966101,11966249-11966560,
           11966640-11967073,11967500-11967941
          Length = 693

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 459 QPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDL 557
           QP+++  ++ F DV P  T ++   + NSG+D+
Sbjct: 386 QPASMYMTDLFPDVVPQTTESSPPRQSNSGKDI 418


>10_07_0028 +
           12019827-12020000,12020083-12020505,12020583-12020642,
           12020709-12020822,12020903-12020908
          Length = 258

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 459 QPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDL 557
           QP+++  ++ F DV P  T ++   + NSG+D+
Sbjct: 42  QPASMYMTDLFPDVVPQTTESSPHRKSNSGRDI 74


>03_05_0173 + 21502765-21504216
          Length = 483

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 423 ENDSQTFHSTKSQPSTVSQ---SNTFRDVSPMQTTTTESTEYNSG 548
           +N+ Q   +T S P+ VS    ++   + S M TTTT ++  NSG
Sbjct: 294 QNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTNSNQNSG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,952
Number of Sequences: 37544
Number of extensions: 229725
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)