Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k24
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 481 VDSVLDVVRKEAEGCDCLQG 540
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 312 RKVRASGYPCGPRARDNGLCTLRT 383
           RKV +S  P      +NGL TL+T
Sbjct: 31  RKVGSSVSPVVELTENNGLYTLKT 54


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 543 ESLQTVATFSFFSDYIEHRIYQLCAFGVVTLSPVV 439
           E   T  +F F +D  + +++  C F    + P++
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLI 234


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 204 LGSYIR*AWHRSDRNVSRRLRP 269
           LGS +   WH SDR+    L+P
Sbjct: 566 LGSALG-GWHPSDRSARLMLQP 586


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 543 ESLQTVATFSFFSDYIEHRIYQLCAFGVVTLSPVV 439
           E   T  +F F +D  + +++  C F    + P++
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLI 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,512
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)