Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k23
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    30   0.28 
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   4.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.9  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 414 GGPEASPGQVRFTLYEKKINDFSHQIAVYMHCCVPV 307
           GG   S  QVR   Y++KIND     + Y++ CVP+
Sbjct: 98  GGLPFSKHQVRVNRYQQKINDLR---SAYINLCVPI 130


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 352 IVNFFFIQCKPYLSW*SLWATSNTSNIKKEQKQCKP 459
           ++N+FF   +  L W  L  T    N    Q Q KP
Sbjct: 98  VINYFFSTGRQPLCWQDLQVTLQVDNAYYHQPQLKP 133


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 481 ITTGLIFVVYTVFVLFLCLRYYWWPRGFTRTG 386
           +TT ++  + TV+       Y WW R F   G
Sbjct: 532 VTTCIMVSIITVYFQLCSENYNWWWRSFITPG 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,637
Number of Sequences: 5004
Number of extensions: 63247
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)