Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k23
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   4.2  
AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 282 LLDILRLNICLSVVECKALLGNSWCRLILLLL 187
           LLD++ + +C+ V++C  L    W  +++L +
Sbjct: 398 LLDVINMALCMHVLKCLRLPSLKWISILMLCM 429


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 282 LLDILRLNICLSVVECKALLGNSWCRLILLLL 187
           LLD++ + +C+ V++C  L    W  +++L +
Sbjct: 398 LLDVINMALCMHVLKCLRLPSLKWISILMLCM 429


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 282 LLDILRLNICLSVVECKALLGNSWCRLILLLL 187
           LLD++ + +C+ V++C  L    W  +++L +
Sbjct: 398 LLDVINMALCMHVLKCLRLPSLKWISILMLCM 429


>AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical
           protein Y56A3A.14 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 652 LASIKKSSCLKFKLQTHAHFDTLLSRFMEV-IHGSNPQSPQFFIR 521
           L  I  S+C  F +  +   D  L+ FM   I GSNP+  +F+IR
Sbjct: 196 LNDILISNCSNFSISGNDVSDKELNFFMRSWIKGSNPRLTKFYIR 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,314
Number of Sequences: 27780
Number of extensions: 362709
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)