Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k23
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.39 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -1

Query: 670 CGFNFFLASIKKSSCLKFKLQTHAHF-DTLLSRF---MEVIHGSNPQSPQFFIRWDPENR 503
           C  NF +       C K ++++ +H  D ++ ++   + ++   N + PQ  +    +N 
Sbjct: 163 CAMNFLIYPHDTQEC-KLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQL---VKNY 218

Query: 502 TRNCDNPITTGLIFVVYTVFVLFLCLRYY 416
           T +C    +TG    +  VFVL   L YY
Sbjct: 219 TADCTQVYSTGNFTCLEVVFVLKRRLGYY 247


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 185 VKSSKINRHHELPSNALHSTTLRHMLSL 268
           V+ +++ R++   SN +  TTL+H++ +
Sbjct: 384 VEVARLIRNYYFESNKIDETTLKHLIDV 411


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 185 VKSSKINRHHELPSNALHSTTLRHMLSL 268
           V+ +++ R++   SN +  TTL+H++ +
Sbjct: 384 VEVARLIRNYYFESNKIDETTLKHLIDV 411


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 286 LWLQCPSNWNTTVHIYC 336
           +WL C S +    H YC
Sbjct: 415 MWLSCSSFFQQFFHCYC 431


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 168 CPYAVASLNVRQIACLRRYSMQKNKVKKIPLDGSFNNI 55
           CP A+   ++     +R+Y + K +VK+   D  + NI
Sbjct: 277 CPPAIFIFDLTTDTLIRKYIIPKEQVKE---DSLYTNI 311


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  FCNIIKRAIEWYFFNFI 99
           F  II+R   +YFFN I
Sbjct: 223 FVVIIRRRTLYYFFNLI 239


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 673 VCGFNFFLASIKKSSCLKFKLQTHAHFDTLLSRFMEV 563
           + GF    ++   S  +K   +  A FD L  RF ++
Sbjct: 279 IVGFTAISSTYSASELVKILNELFARFDQLSERFEQL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,641
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)