Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19k22
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.32
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 27 1.7
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 26 3.9
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 5.2
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 6.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.1
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 9.1
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.1
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.32
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 318 FSNGEENMTISQVTNGISEIVQQYSGTE-VLNGSDVKIQFRAR-----KDDMLHLYSSFS 479
+ N E+ T+S + + S+ S ++ VL ++I+ R DD LHL
Sbjct: 241 YLNSSEDSTLSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILNDDELHLTEEVL 300
Query: 480 SFIGEIPLNLNINNAKYMSFGGDLKKITELK 572
SF+ + P+ L + ++F +L I +L+
Sbjct: 301 SFLTDDPVTLTASELTDINFRQELDVIRQLE 331
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 282 DYGNIICKVDVEFSNGEENMTISQVTNGISEIVQ-QYSGTEVLNGSDVKIQFRARKDDML 458
+YG I V+ F N+ +GI+ + +Y GT + NG+ D+
Sbjct: 272 NYGEDISNVNTTFFEASPNV-FGTFDHGINSFIPTEYLGTTLNNGASSNGSCVINYDNFG 330
Query: 459 HLYSSFSSFIGEIPLNLNINNAK 527
+ + S++ +I N N ++ K
Sbjct: 331 FMMGASSTYFNKIMRNFNDSSTK 353
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 483 KMKNLNINATYHLFLLETVFSHHC 412
K K + I + LF++ FSHHC
Sbjct: 2 KRKIIAIGIFFRLFIIHIHFSHHC 25
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 511 FKFNGISPIKDEKL---EYKCNISSFLARNCIFTSLPFKTSVPEYCCTISLIPLV 356
++ + +S IK++ L + CNI + LA N I S+P +S Y C +L L+
Sbjct: 561 YQISTVSGIKNDPLFTLDQTCNIIAKLADNLIHPSVPIGSSA--YRCRRNLADLL 613
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/94 (20%), Positives = 45/94 (47%)
Frame = +3
Query: 297 ICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLYSSF 476
I ++D+ + + + +S++ I E+ + + L G V I+ ++ L +SF
Sbjct: 605 IIQLDISRRHLDSLIGLSELCPSIEELTLEGNEIAYLTGCPVTIRDLNAVENRLSSLTSF 664
Query: 477 SSFIGEIPLNLNINNAKYMSFGGDLKKITELKFE 578
S+ + L+++ N + ++ L + ELK +
Sbjct: 665 SNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVD 698
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = -1
Query: 613 KCICKHSNFQTNSNFNSVIFFKSPPNDMYFALLIFKFNGISPIKDEKLEYKCNISSFL 440
+CI K +N +++ + N ++ + S +MY ++ + ++ + L K +S +
Sbjct: 22 ECIVKFTNLRSSEDVNLLLCYASIHGEMYLDYVLVRVTEFDEVQRQGLLNKRTMSGLV 79
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 198 GDSFTIQGLIQDNPKMVTISLIGGIQAPDYGNIICKVDVEFSNGEENMTISQVTN-GISE 374
G + +G+I D+PK+++I L + + + I + ++ SN + + + + T+
Sbjct: 346 GSDKSQKGIISDSPKLLSIPL-NNVPSKSLNDDITQDELNSSNADVDEEVIETTSLEEKN 404
Query: 375 IVQQYSGTEVLNGS 416
+ Q T + NG+
Sbjct: 405 VDNQEFVTSISNGN 418
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 598 HSNFQTNSNFNSVIFFKSPPNDMYFALLIFKFNGISPIKDEKLEYKCNISSFLA 437
+S + +N + V KSPP+ + +FNG +L+ CN S+F A
Sbjct: 56 NSRYYSNHSHGLVHGSKSPPSSQFLVPSFLQFNG-------QLKALCNNSAFQA 102
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 454 ISSFLARNCIFTSLPFKTSVPEYC 383
I SF+ C++ S F S+PE C
Sbjct: 44 IISFMTMLCMYGSSVFMPSIPELC 67
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/73 (20%), Positives = 31/73 (42%)
Frame = +3
Query: 294 IICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRARKDDMLHLYSS 473
++ K+D E S + T S + + +V G V + QF+ D+++ ++
Sbjct: 1191 VMLKID-ETSGSKSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNN 1249
Query: 474 FSSFIGEIPLNLN 512
++ P N N
Sbjct: 1250 YNERTSRYPFNPN 1262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,181
Number of Sequences: 5004
Number of extensions: 57898
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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