Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19k22
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0801 - 7750548-7751708 32 0.33
01_01_0761 - 5874953-5876803 31 1.0
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580... 30 1.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 1.8
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789... 30 1.8
01_01_0428 + 3250204-3251724 29 4.1
01_06_0930 + 33134385-33138257 28 7.1
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 27 9.4
05_01_0430 - 3406472-3406490,3406662-3406681,3407330-3407428,340... 27 9.4
02_01_0586 - 4334896-4335177,4336340-4338007 27 9.4
>08_01_0801 - 7750548-7751708
Length = 386
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 8 DRHLVEVTVYFLKQNCLCKIENVKRVLAVYRRKSRHQYSRL--CCTEF-TCHHRQEHVFA 178
DR+ V+ + L Q LCK NV V +HQ +L C EF +C + + V A
Sbjct: 287 DRYAVD-RLKLLCQGILCKNLNVHNVATTLALADQHQCDKLKDACIEFMSCSKKMKGVVA 345
Query: 179 TKG 187
+KG
Sbjct: 346 SKG 348
>01_01_0761 - 5874953-5876803
Length = 616
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/72 (25%), Positives = 27/72 (37%)
Frame = +3
Query: 252 ISLIGGIQAPDYGNIICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQ 431
IS G +Q YG I FS N +++ YSG V + + V
Sbjct: 415 ISAAGWVQTSSYGKITATWTQRFSFVNTNQVREDTEQTVNQTTDAYSGVHVTDHAGVAYS 474
Query: 432 FRARKDDMLHLY 467
A + L++Y
Sbjct: 475 QEAEQSFPLYIY 486
>03_02_0132 -
5808606-5808696,5808804-5808875,5809133-5809204,
5809299-5809379,5809475-5809618,5809708-5809779,
5810027-5810140,5810684-5810755,5811462-5811609,
5812120-5812231
Length = 325
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 453 MLHLYSSFSSFIGEIPLNL-NINNAKYM 533
+ HLY SF++F GEIP+ L N+ +Y+
Sbjct: 170 LTHLYLSFNNFKGEIPVELANLPELRYL 197
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 264 GGIQAPDYG-NIICKVDVEFSNGEENMTISQVTNG--ISEIVQQYSGTEVLNGSDVKIQF 434
G + YG +I+ DV S +++ + +TNG S V++ +LN + I
Sbjct: 908 GPCPSSSYGQSILNSHDVSLSLPQKDSSCIAITNGPSSSNYVEEVPMETILNQPTLSIPL 967
Query: 435 RARKDDMLH 461
A KD++LH
Sbjct: 968 EACKDELLH 976
>02_05_0874 -
32377906-32378131,32378269-32378384,32378516-32378921,
32379023-32379139,32379229-32379291,32380183-32380373
Length = 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = -3
Query: 269 SSYQRNCHHFWVILYQSLYSKAVSSTESLW*QKHV 165
+S +R HF +++Y++L++ AV + +LW ++ V
Sbjct: 32 ASLKRGMSHFVLVVYRNLFATAVMAPFALWFERRV 66
>01_01_0428 + 3250204-3251724
Length = 506
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 441 RKDDMLHLYSSFSSFIGEIPLNL 509
R DM+HL S S+F G+IP+ L
Sbjct: 127 RLTDMIHLNFSHSNFYGQIPIGL 149
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 457 NISSF-LARNCIFTSLPFKTSVPEYCCTISL 368
N+ SF LA C+ SLP T + +C T++L
Sbjct: 805 NLESFTLANCCVIGSLPPNTEIFRHCMTLTL 835
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 256 EIVTIFG--LSCINPCIVKLSPPLRAFGSKNMFLSVMTGKFSA 134
E TIF + IN + L PPL+AFG +N +S + K+ A
Sbjct: 1064 ERTTIFDFIIQNINTVLKALRPPLKAFGQRNS-MSHIDAKYPA 1105
>05_01_0430 -
3406472-3406490,3406662-3406681,3407330-3407428,
3407810-3407880,3407956-3408127
Length = 126
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 287 IIRCLDSSYQRNCHHFWVILYQ 222
+IRC+ + +++ H W+ LYQ
Sbjct: 103 LIRCISAIFEKQAHSPWIRLYQ 124
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 265 EESKHLIMEISSVKLMWNFLMVK 333
++ +HL+ + ++WNFL VK
Sbjct: 562 KQERHLVATVGKYSVVWNFLQVK 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,218
Number of Sequences: 37544
Number of extensions: 318893
Number of successful extensions: 701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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