Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k21
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.53 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   6.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 366  GGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRN---MKLVQFSYKDSPKNIRVGYL 536
            G    SF K+  LSKS+  +DI  N ++  +V K       KL Q  Y +   N    + 
Sbjct: 886  GNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFS 945

Query: 537  EGDD 548
            E +D
Sbjct: 946  EHED 949


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 72  LYLHKRILATSFRICYNLMH*NNLWIGSDVNRKLIKIKSILHFTHYFLL*KLVKTS 239
           LY   R++A S ++ Y     +N W+   +   ++K++ I HF    L+   V+TS
Sbjct: 412 LYELIRLIAYSGKLDYMKDILDNFWVRQKLLPSILKVEQIFHFIFRALISAEVQTS 467


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 525 HVYFLDYLCMKTEL 484
           H YF D+LC+ TEL
Sbjct: 767 HFYFRDHLCVATEL 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,257
Number of Sequences: 5004
Number of extensions: 43013
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)