Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k21
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    31   0.54 
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    29   3.8  
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    28   5.0  
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337...    28   6.6  

>04_03_0658 + 18447986-18448117,18448204-18448317,18448388-18448507,
            18448589-18449215,18449289-18449462,18449545-18449809,
            18449889-18449959,18450043-18450145,18450221-18450280,
            18450533-18450744,18450830-18450901,18451446-18451502,
            18451598-18451882,18452359-18452371,18452396-18452463,
            18452649-18452747,18452836-18452967,18453038-18453141,
            18453234-18453423,18453519-18453524
          Length = 967

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 408  KSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKDSPKNIRVGYL 536
            +  N+ID  + T++   + + R M   QFS KD P NIR+ Y+
Sbjct: 899  RQTNRIDCGIFTLKFMEIWRPRVMLTNQFSQKDIP-NIRIQYV 940


>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 249 FDQNRDKRIGRYISLNGFV 305
           +++N+DK+  RYI L GF+
Sbjct: 225 YERNKDKKANRYIKLKGFI 243


>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 510 PKNIRVGYLEGDDIVDINKADSSLP 584
           P+   VGY++GD  +D+ K D + P
Sbjct: 19  PREHAVGYVQGDSYLDLKKFDDTWP 43


>05_01_0428 -
           3379116-3379262,3379357-3379537,3379690-3379785,
           3379886-3380034,3380120-3380392,3380895-3380983,
           3381923-3382015,3382143-3382238,3382370-3382477,
           3382917-3383208
          Length = 507

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 249 FDQNRDKRIGRYISLNGFV 305
           +++N+DKR   YI+L GF+
Sbjct: 208 YERNKDKRASTYINLKGFI 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,251
Number of Sequences: 37544
Number of extensions: 218004
Number of successful extensions: 302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)