Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k17
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    30   0.36 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.3  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   4.4  

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 477 CTRLELPIRYKFLSFESAIHFC*TQYLRFVLRFVYRLWP 361
           C    L +RY  L +   IH     YL F +  + R+WP
Sbjct: 30  CALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWP 68


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 303 ILGECKRVREETGERSEIMKATSDRRIEERIGDIEF--NKSELQIQRKEICIELEA 464
           +L EC  +RE   E      A SD ++E  +  ++   + S LQ+ ++   I +EA
Sbjct: 515 VLSECNMLRETASEEKNAFDAESD-KLERELQQLKLSSHNSMLQLDQRIQSINIEA 569


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 249 SNDLRCXNAE--DQXQLADRILGECK-RVREETGERSEIMKATSDRRIEERIGDIEFNKS 419
           +  LR  N+E  +Q ++A   L   K ++     E S + +        + + DIE  K 
Sbjct: 121 NQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAH--QALSDIEERKK 178

Query: 420 ELQIQRKEICIELEALGVYKTRLQDCLASLQANALNICRK 539
           +         ++ E L   K+ L   LASLQ++   +C K
Sbjct: 179 QHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEK 218


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 273 AEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQI 431
           A +Q +   ++  ECKR++    +  E +K  +D R+E  +  +   +  L+I
Sbjct: 661 AAEQSKEVAKLQAECKRLQAINSKVMEEVKVYNDSRVEALLAKVSSLEETLKI 713


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 301 LSASXCWSSAFXQRKSLLTFHXCIVNFGALG---GXHTKACSDSLVVAIXAPITLRMPNC 131
           LS+S C  SA     SLL+   C+  FG        HTKA SD + +A      +     
Sbjct: 240 LSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKA-SDIVQIASGTEHNILRTKK 298

Query: 130 ASPILYSY 107
            S ++Y +
Sbjct: 299 GSVLIYGW 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,678
Number of Sequences: 5004
Number of extensions: 41692
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)