Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19k17
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 28 7.1
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 27 9.4
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 27 9.4
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 27 9.4
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 27 9.4
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 9.4
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 9.4
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 27 9.4
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 27 9.4
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 27 9.4
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 396 GDIEFNKSELQIQRKEICIELEALGVYKTRLQDCLASLQANALNICRKCLMLRDGRIGID 575
GD+ + + IQ + I + L ++GV T LQD + L RKC+ ++ +
Sbjct: 2800 GDVAASGVSMPIQSEMINVLLRSVGVTLTELQDVVFKL----AYFERKCVFYSPEQLNSE 2855
Query: 576 LVVDEVEQCLQQEITTIVG 632
++ +Q ++Q ++G
Sbjct: 2856 IISHYAKQFIKQVYVLVLG 2874
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 396 GDIEFNKSELQIQRKEICIELEALGVYKTRLQDCLASLQANALNICRKCLMLRDGRIGID 575
GD+ + + IQ + I + L ++GV T LQD + L RKC+ ++ +
Sbjct: 2827 GDVAASGVSMPIQSEMINVLLRSVGVTLTELQDVVFKL----AYFERKCVFYSPEQLNSE 2882
Query: 576 LVVDEVEQCLQQEITTIVG 632
++ +Q ++Q ++G
Sbjct: 2883 IISHYAKQFIKQVYVLVLG 2901
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 342 ERSEIMKATSDRRIEERIGDIEFNKSELQIQRKEICIELEALGVYKTRLQDCLASLQANA 521
E + MK TSD RIE + + + K + + + ++L+ YK L+D L L A
Sbjct: 432 ENIDYMK-TSDSRIEMILEESKTRKMMDESTIERLRLDLDNEKSYKKNLEDLLNDLNQRA 490
Query: 522 LN 527
LN
Sbjct: 491 LN 492
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 303 ILGECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQIQRKEICIELE 461
I+ CK V E T R E + A + +E IGD ++ ++C+ +E
Sbjct: 267 IIAVCKNVPEVTRRRLETLSANDNLVFDEGIGDDIIISADTGDGVTKVCMSIE 319
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 351 EIMKATSDRRIEERIGDIEFNKSELQIQRKEICIELEALGVYKTRLQD 494
E KA SD I + DIE +L + +K++ E LG +TR+ +
Sbjct: 40 ETKKALSDANISKE--DIEEMSKKLALLKKQVIAGREKLGAIETRISN 85
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 261 RCXNAEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEERI 395
R ED+ Q A+R + +R R+E ER A R+ EE++
Sbjct: 111 RAEREEDERQFAERRRQDDERRRKEEDERKAKADAEKIRKNEEKV 155
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 261 RCXNAEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEERI 395
R ED+ Q A+R + +R R+E ER A R+ EE++
Sbjct: 111 RAEREEDERQFAERRRQDDERRRKEEDERKAKADAEKIRKNEEKV 155
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 273 AEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEER--------IGDIEFNKSELQ 428
A ++ QLAD + E ER E ++ ++RR+E+R I K + +
Sbjct: 685 ANEEAQLADLLERERHNQLIRENERREAVERANNRRLEDRRSRDKLDHIVRERSEKEQFE 744
Query: 429 IQRKEICIELEALGVYKTRL 488
++++ + E EA+ K L
Sbjct: 745 LEKRRLLAEKEAMNRKKNHL 764
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 273 AEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEER--------IGDIEFNKSELQ 428
A ++ QLAD + E ER E ++ ++RR+E+R I K + +
Sbjct: 685 ANEEAQLADLLERERHNQLIRENERREAVERANNRRLEDRRSRDKLDHIVRERSEKEQFE 744
Query: 429 IQRKEICIELEALGVYKTRL 488
++++ + E EA+ K L
Sbjct: 745 LEKRRLLAEKEAMNRKKNHL 764
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 273 AEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEER--------IGDIEFNKSELQ 428
A ++ QLAD + E ER E ++ ++RR+E+R I K + +
Sbjct: 685 ANEEAQLADLLERERHNQLIRENERREAVERANNRRLEDRRSRDKLDHIVRERSEKEQFE 744
Query: 429 IQRKEICIELEALGVYKTRL 488
++++ + E EA+ K L
Sbjct: 745 LEKRRLLAEKEAMNRKKNHL 764
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 273 AEDQXQLADRILGECKRVREETGERSEIMKATSDRRIEER--------IGDIEFNKSELQ 428
A ++ QLAD + E ER E ++ ++RR+E+R I K + +
Sbjct: 685 ANEEAQLADLLERERHNQLIRENERREAVERANNRRLEDRRSRDKLDHIVRERSEKEQFE 744
Query: 429 IQRKEICIELEALGVYKTRL 488
++++ + E EA+ K L
Sbjct: 745 LEKRRLLAEKEAMNRKKNHL 764
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 312 ECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQIQRK 440
EC+++RE+ E S+I++ S + E G N++ + + RK
Sbjct: 301 ECRKLREQNDELSDILEQLS-KMAHEMAGGRGRNETPMDVARK 342
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 312 ECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQIQRK 440
EC+++RE+ E S+I++ S + E G N++ + + RK
Sbjct: 301 ECRKLREQNDELSDILEQLS-KMAHEMAGGRGRNETPMDVARK 342
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 312 ECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQIQRK 440
EC+++RE+ E S+I++ S + E G N++ + + RK
Sbjct: 61 ECRKLREQNDELSDILEQLS-KMAHEMAGGRGRNETPMDVARK 102
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 312 ECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQIQRK 440
EC+++RE+ E S+I++ S + E G N++ + + RK
Sbjct: 301 ECRKLREQNDELSDILEQLS-KMAHEMAGGRGRNETPMDVARK 342
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,915,835
Number of Sequences: 27780
Number of extensions: 237805
Number of successful extensions: 695
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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