Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k17
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 151 TLRMPNCASPILYSYFNC 98
           TL   + A P+L SYFNC
Sbjct: 246 TLPQVSDAIPLLGSYFNC 263


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 151 TLRMPNCASPILYSYFNC 98
           TL   + A P+L SYFNC
Sbjct: 246 TLPQVSDAIPLLGSYFNC 263


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 151 TLRMPNCASPILYSYFNC 98
           TL   + A P+L SYFNC
Sbjct: 246 TLPQVSDAIPLLGSYFNC 263


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 151 TLRMPNCASPILYSYFNC 98
           TL   + A P+L SYFNC
Sbjct: 314 TLPQVSDAIPLLGSYFNC 331


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 568 PILPSLSMRHFRQIFKALACKEAR 497
           PI+ S+    FR+ FK +  K AR
Sbjct: 322 PIIYSIFNTEFREAFKRILTKGAR 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,039
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)