Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k13
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    88   1e-18
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    30   0.32 
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    29   0.74 
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    28   0.98 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   6.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   9.1  

>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 37/82 (45%), Positives = 56/82 (68%)
 Frame = +1

Query: 388 LNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWF 567
           +N   R   L    ++ W +Q     + K F+FKNF EA+GFM+ VAL A++++HHPEW 
Sbjct: 1   MNTSARLLALVSKSKNNWILQQGDTKLFKSFRFKNFIEAWGFMSCVALRAQQLNHHPEWT 60

Query: 568 NVYNKLQVTLSSHDVNGLSKRD 633
           NVYNK+ +TL++HD  GL+++D
Sbjct: 61  NVYNKVDITLTTHDTKGLTEKD 82


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +1

Query: 415 LKPLLESGWKIQSNRDAIE------KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNVY 576
           LKPLL++ W+I  +  +++      K F   NF   +  ++  + L   +++   +FN+Y
Sbjct: 119 LKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLY 178

Query: 577 NKLQVTLSSHDVNGLSKRD 633
               +T S H +N +  +D
Sbjct: 179 ----LTNSPHIMNDIINKD 193


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 331 VRYASVSSTSPSKRKMADKLNQEERTTELKPLLESGW 441
           + Y++ S+   S++  AD L    + TELKP    GW
Sbjct: 37  ILYSNRSACYASEKDYADALKDATKCTELKPDWAKGW 73


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 346 VSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKE 477
           +S+    K++  DKL QE +  ELK + ES  K++   + +  +
Sbjct: 64  LSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDD 107


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 382 DKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPE 561
           + L+Q+E  + L+ L+++  KI+S+    +   +F +       M R+  +    D    
Sbjct: 22  EHLDQDE--SFLRILIDTRKKIRSSYFKPQTFDEFVHCLARVRAMKRLVSICSNFDEEDN 79

Query: 562 WFNVYNKLQVTLSSH 606
           W  V+N L V   SH
Sbjct: 80  WNGVWNTLVVDGDSH 94


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 337 YASVSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF 480
           ++S +S SPS     + L  +  TTE+K    S  ++  N +  + EF
Sbjct: 555 HSSSASPSPSIDMKKESLELKNDTTEIKEKKNSKSRVVGNTENSKDEF 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,892
Number of Sequences: 5004
Number of extensions: 49351
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)