Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19k12
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 1.6
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 27 2.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 4.9
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 4.9
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 6.4
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 6.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 25 6.4
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 6.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.5
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 135 IWDKKVRNGHIKRITDNDIQSLVLE-IVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKN 311
I +K + +G + + N +Q++ + G+NV+ + I+C ++ G ++P +V K+
Sbjct: 920 IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVS-GKS 978
Query: 312 LKKYFTFEVQVLDDKNVRRRF 374
L + +E + RF
Sbjct: 979 LPSFVPYETSAKSGGFIASRF 999
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 479 VSQVELYLVPAFVQPHGHSTDERLNPCCRLVV 384
VSQV ++VP + P H+ ER CC+ +
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVER---CCKKAI 378
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 235 VVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 134
++L F P I+ T + L++I C L F+S++
Sbjct: 114 LILLFSPYIAITSMARLLTLITLFCSLVCFISEV 147
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 315 LNFLLS*PKKVTLFQGSSLDPPGMLC 238
LN LLS PK L Q S+LD +C
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVC 145
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 581 IQSVGEINSSYSAVCMYLDS*GLNIVSAVSSSCEVSQVELYLVPAFVQPHGHSTDERLN 405
++ + + N +YS + + I S +SS + S + YL+P + H S + RL+
Sbjct: 423 VEPIEDCNEAYSLSSKFHFKKEILIASQLSSHLDYSTFKNYLMPLAITLHFISEELRLD 481
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 360 VRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYG--TNYVETLRVQI 533
+RRRF A++ Q VKP+ + + DE W + +R G + +E ++ +
Sbjct: 685 LRRRFHATSEQVENCVKPYKYDVEVNDDE-WKSSRGQAEKLLQRELGLCQSALEKIKNAV 743
Query: 534 HANCRIRRV--YFSDRLYSEDELPA 602
+ R+ +V Y ++ S + LPA
Sbjct: 744 GSR-RMNQVLQYLEEQKTSSEPLPA 767
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 248 ACYVRGTDVRSHDFEHQALYIVICYPLYVPIANFFV--PNLQRFAAYDL 108
AC VR T H+A+Y V+C + +P+ F + P LQ A +++
Sbjct: 154 AC-VRTTVQNGRSVYHRAVYWVMCMVIGIPLLIFLLISPVLQTPALWEI 201
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 47 FDRSTTSTRILNEIK 3
FD+ T TRILNEIK
Sbjct: 838 FDKRTKVTRILNEIK 852
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 113 HRQQTFANLGQKSSQWAHKEDNR*RYTK 196
H + TF L Q+ +W NR RY++
Sbjct: 455 HAKSTFKQLDQELYEWEKNLPNRLRYSR 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,938
Number of Sequences: 5004
Number of extensions: 51642
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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