Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k09
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.3  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   4.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   6.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.9  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -1

Query: 386 QIINQLGTMFNKGKCL*FQNSVLKSKLQSKVDALCIMSKELDKCSMERDKYKVLVEHLKS 207
           +++ + GT+ N+ KCL  Q    +  +   +  L I+ K+LDK   +  + ++ +  L S
Sbjct: 98  KLLKENGTLKNEEKCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLAS 157

Query: 206 K-KVVSSKI 183
           +  V+ S+I
Sbjct: 158 ENNVLISRI 166


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 83 EVNEYVLKGNDKIKTYYF 30
          +VNE+VLK     KTYYF
Sbjct: 30 KVNEHVLKSEPFTKTYYF 47


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 64  NTYSFTSTFSMLLWSLVCANISPLL 138
           NTY++T      +WSLV ++ +P++
Sbjct: 272 NTYTYTGHRGKHIWSLVVSSANPII 296


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 413 HKNLYKQCLTNVTWHERLQLVKLKY*SSDNTFV---FSAPDVNHF 538
           +KN  K+ + N  +  R    +LK    DNTFV   F+  D  HF
Sbjct: 64  YKNSQKEKVINPVFDPRKPAHELKGNKRDNTFVTSLFTGDDSEHF 108


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -1

Query: 308 LQSKVDALCIMSKELDKCSMERD-KYKVLVEHLKSKKVVSSKIAENNNAYRFTPTNTISN 132
           LQ   D    M++     S   D K  + +  L SKK  +S+  ENNN    TP+     
Sbjct: 420 LQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATENNN----TPSKAKVK 475

Query: 131 GDMFAQTKDHNNMLKVEVNEYVLKGNDK 48
            +   ++K  ++  + +++    K ++K
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEK 503


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 435 HCLYKFLCYLKFILLRSNYKSVRYNV 358
           +CLYKF    K ILL S++    Y++
Sbjct: 191 YCLYKFALQRKRILLISSHDDQLYSI 216


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 576  TLLLPVQDTKQVKK*LTSGALNTNVLSDDQYFSFTS 469
            T  L V   K V K +TS  +N NVL+ + +F F S
Sbjct: 1160 TAKLIVHFMKFVLKKITSMEVNLNVLTRELHFKFVS 1195


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 299 KVDALCIMSKELDKCSMERDKYKVLVEHLKS 207
           KVD+L + S   +K ++E D Y   +E+  S
Sbjct: 328 KVDSLRVQSPRSEKATIELDNYNPSLENCSS 358


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 317 KSKLQSKVDALCIMSKELDKCSMERDKYKVLVEHLKSKKVVSSK 186
           K +++  +     + +E++    E DKYK LVE    K+   +K
Sbjct: 130 KEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,840
Number of Sequences: 5004
Number of extensions: 48306
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)