Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k09
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144...    33   0.14 
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    32   0.44 
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    31   1.0  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    29   4.1  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    29   4.1  

>01_01_0171 +
           1446221-1446902,1447040-1447221,1447339-1447409,
           1447480-1447486,1447530-1447619,1447694-1447981,
           1448121-1448333,1448860-1449087
          Length = 586

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -1

Query: 332 QNSVLKSKLQSKVDALCIMSKELDKCSMERDKYKVLVEHLKSKKV 198
           +N  L+S L+SK+  L   SKELDK +++ +  ++ +E  K K V
Sbjct: 246 ENKKLRSDLESKMQLLDSRSKELDKLAVQSNSDRMNLEKEKEKNV 290


>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
            26475149-26475260,26475405-26475463,26475559-26475633,
            26475734-26475832,26476128-26476343,26476426-26476500,
            26476583-26476670,26476757-26476902,26477240-26477347,
            26477417-26478436,26478437-26478715,26479471-26480520,
            26480636-26480692,26480780-26480837,26481379-26481458,
            26481598-26481654,26481764-26481833,26481967-26482202,
            26482341-26482445,26482534-26482680,26482758-26482823,
            26482916-26482979,26484040-26484200,26484308-26484400,
            26484487-26484600,26484684-26484803,26484893-26484976,
            26485061-26485216,26485389-26485811
          Length = 1885

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = -1

Query: 320  LKSKLQSKVDALCIMSKELDKCSMERDKYKVLVEHLKSKKVVSSKIAENNNAYRFTPTNT 141
            +K K     DAL  + +EL+K      K   +   LK +KV+  ++AEN  A     +  
Sbjct: 1316 MKDKADEISDALVSVQRELEK------KTSAMESILKQQKVLEEELAENGAALLILRSEL 1369

Query: 140  ISNGDMFAQTKDHNNMLKVEVNE 72
              +  + ++    NN LKV + E
Sbjct: 1370 EHSESLSSELFKENNNLKVMLEE 1392


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 278 MSKELDKCSME-RDKYKVLVEHLKSKKVVSSKIAENNNAYRFTPTNTISNGDMFAQTKDH 102
           ++  L  C++E  D Y  ++ HL  +  +S    +  +  R +P    + G+ FA  KDH
Sbjct: 450 LAHRLSPCTLEGMDIYSTVLYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDH 509

Query: 101 NNMLK 87
              LK
Sbjct: 510 ETALK 514


>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
            21354741-21356354,21356446-21356553,21356649-21357509,
            21357586-21357632,21358591-21358697,21359512-21359630,
            21359706-21359915,21360412-21360693,21360820-21360952,
            21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 44   LFYRFLLIHIHLPQLLACYCGLWFVQTY 127
            ++Y   L    L QL++C CG WF + Y
Sbjct: 1458 VWYTLGLFGTRLKQLMSCRCGEWFGEEY 1485


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 550 ETSKKMINIRSAKHECVIRRSIFQFHQL*SFVPC 449
           ETS++M+ +  A  ECV R  I  FH +    PC
Sbjct: 763 ETSREMLKVH-AHTECVKREKIGSFHSIAREYPC 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,751
Number of Sequences: 37544
Number of extensions: 247607
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)