Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k08
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    26   2.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   2.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   3.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   3.6  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   3.6  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   3.6  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    25   6.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   8.2  

>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 267 KKMLKTFTPSRPVLELANRSLRNVRTTQKQTLHKKYTNNNKYI 395
           K+ LK FT +  +   AN++++  +T QK TL  +  NN K I
Sbjct: 191 KEKLKPFTKTMQIH--ANKTVQLSQTIQKATLLLQRLNNTKNI 231


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  FITTLVCNAKLKFNIIRFTSRDAPKNAMTM 99
           +IT+L  +A LKF   R  S ++P  A++M
Sbjct: 121 YITSLCLSAILKFFSFRIISEESPNLALSM 150


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +3

Query: 306 LELANRSLRNVRTTQ--KQTLHKKYTNNNKY 392
           +E+ANR +  +RTT+  K   HK+ ++++K+
Sbjct: 527 MEMANRVISEIRTTKIYKAQQHKQKSSHHKH 557


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +3

Query: 261  GMKKMLKTFTPSRPVLELANRSLRNVRTTQKQTLHKKYTNNN 386
            G ++ L+T TP+   ++ ++  LR  ++  +    + +TN N
Sbjct: 1397 GNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNEN 1438


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 352 FCVVRTLRSDRLASSSTGRDGVNVFNIFFIPLYLCLTKFHDMMKGSF 212
           FCV  +L+ D + ++    DGV + ++  I       K HDM   +F
Sbjct: 595 FCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 412 FYIEEFMYLLLFVYFLCSVCFCVV 341
           +Y E F + LLFVYF  ++   +V
Sbjct: 51  YYFEGFSHSLLFVYFFLTLIILLV 74


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 25  VCNAKLKFNIIRFTSRDAPKNA 90
           VCNA L  ++ +F SRD   NA
Sbjct: 322 VCNAVLLAHVQKFNSRDPRANA 343


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 393 CIYYYSCIFYVAFVFVLFV 337
           C + Y+CIF++  VF   +
Sbjct: 343 CFWVYACIFFLTRVFCFLI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,285
Number of Sequences: 5004
Number of extensions: 36459
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)