Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19k08
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    30   0.78 
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    28   3.1  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 116 FYYVMS-IWLYLFPIAVAVVMFLLIGTICERRIEAT 220
           FY+V   IW +LFP ++  V+ + I T C R I AT
Sbjct: 351 FYFVNEKIWKFLFPFSI--VLIIGITTFCARTILAT 384


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 408 TLKNLCIYYYSCIFYVAFVFVLFVRCGVIGWQ 313
           T  +L +Y  S IFY AF+++   R GV  WQ
Sbjct: 471 TTIHLDMYTSSWIFYAAFMWIYSKRHGVRKWQ 502


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -2

Query: 396 LCIYYYSCIFYV--AFVFVLFVR---CGVIGW 316
           LC Y Y C FY      F+ F     CG++GW
Sbjct: 136 LCFYEYLCHFYFDEKIRFLTFTNSPVCGIVGW 167


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
           protein T04B2.8 protein.
          Length = 111

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 411 FTLKNLCIYYYSCIFYVAFVFVLFVRCGVIGWQVPVQAE 295
           F L+ L  +Y++ +F   F+  L   CGV     P + +
Sbjct: 6   FGLEALNTFYFNLVFLCGFLGYLVFNCGVCDTASPAECQ 44


>AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical
           protein F59B1.6 protein.
          Length = 359

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 LTFYYVMSIWLYLFPIAVAVVMFLLI 187
           L+ Y ++ IW++LF I V  +  +LI
Sbjct: 99  LSSYVLVIIWIFLFAITVFTMFIILI 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,170
Number of Sequences: 27780
Number of extensions: 211826
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)